Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.6e-174 615.9 293 100.0
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.7e-128 463.0 287 75.3
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 3.2e-127 458.8 268 77.2
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.1e-126 456.1 259 80.3
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.7e-126 455.7 241 84.2
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 7.9e-126 454.1 262 79.4
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.0e-125 453.8 250 80.8
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.4e-125 453.4 266 78.6
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.8e-125 453.0 253 81.8
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.3e-125 452.6 247 82.6
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 8.8e-125 450.7 243 83.5
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.1e-124 450.3 238 85.3
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.0e-124 449.5 239 84.5
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 4.4e-124 448.4 267 76.4
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.7e-124 448.0 239 84.5
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 5.7e-124 448.0 231 86.6
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 9.7e-124 447.2 279 74.6
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 1.3e-123 446.8 259 79.5
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.7e-123 446.4 231 85.7
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 2.8e-123 445.7 231 86.6
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.8e-123 445.7 240 82.1
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.7e-123 445.3 265 77.0
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 6.3e-123 444.5 231 84.4
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 2.4e-122 442.6 261 77.8
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 2.4e-122 442.6 253 79.4
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.4e-122 442.6 231 85.3
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 2.4e-122 442.6 286 71.7
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 3.1e-122 442.2 232 84.9
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.1e-122 441.8 235 83.4
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 4.1e-122 441.8 263 77.2
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 5.3e-122 441.4 232 84.9
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 9.1e-122 440.7 255 79.2
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 9.1e-122 440.7 235 83.0
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 9.1e-122 440.7 235 83.4
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.2e-121 440.3 235 83.0
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.0e-121 439.5 235 83.0
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 4.5e-121 438.3 276 71.7
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 5.9e-121 438.0 231 84.0
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 5.9e-121 438.0 260 78.1
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 7.7e-121 437.6 263 76.4
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 1.3e-120 436.8 254 78.0
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.3e-120 436.8 257 77.0
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.3e-120 436.8 257 77.0
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.7e-120 436.4 263 76.4
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 2.2e-120 436.0 231 82.3
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.9e-120 435.6 242 81.4
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 3.8e-120 435.3 253 76.7
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 3.8e-120 435.3 233 83.7
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.8e-120 435.3 261 74.3
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 3.8e-120 435.3 243 79.8
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 6.5e-120 434.5 261 76.6
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 8.5e-120 434.1 256 76.2
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.1e-119 433.7 234 81.6
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.4e-119 433.3 256 75.8
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.9e-119 433.0 244 79.1
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 2.5e-119 432.6 261 75.5
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.5e-119 432.6 254 78.7
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 3.2e-119 432.2 253 76.7
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.2e-119 432.2 246 79.7
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 3.2e-119 432.2 234 81.2
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 3.2e-119 432.2 234 82.5
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 4.2e-119 431.8 253 76.3
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 4.2e-119 431.8 234 81.6
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 5.5e-119 431.4 262 75.6
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 7.2e-119 431.0 232 82.8
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 9.4e-119 430.6 233 82.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 9.4e-119 430.6 254 75.2
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.2e-118 430.3 264 74.2
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 2.7e-118 429.1 234 79.9
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 2.7e-118 429.1 235 80.4
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 2.7e-118 429.1 235 81.3
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 3.6e-118 428.7 254 76.8
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 4.7e-118 428.3 231 82.3
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 6.1e-118 427.9 249 79.1
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 6.1e-118 427.9 238 78.6
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 8.0e-118 427.6 228 82.0
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.0e-117 427.2 253 75.5
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 1.0e-117 427.2 254 75.2
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.0e-117 427.2 232 80.6
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.8e-117 426.4 233 81.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.8e-117 426.4 233 81.1
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.8e-117 426.4 235 77.9
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 1.8e-117 426.4 228 82.0
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 2.3e-117 426.0 238 80.7
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.3e-117 426.0 233 80.7
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.3e-117 426.0 232 81.9
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 3.0e-117 425.6 260 73.1
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.0e-117 425.6 231 81.4
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 3.9e-117 425.2 253 75.9
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 5.2e-117 424.9 240 78.3
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 5.2e-117 424.9 236 78.8
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 5.2e-117 424.9 232 80.6
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 6.7e-117 424.5 243 78.2
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 8.8e-117 424.1 236 78.8
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 1.1e-116 423.7 230 80.9
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 2.0e-116 422.9 256 75.4
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 2.6e-116 422.5 231 80.5
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 3.3e-116 422.2 232 81.0
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 4.4e-116 421.8 263 74.1
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 5.7e-116 421.4 235 78.7
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 5.7e-116 421.4 239 78.2
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 7.4e-116 421.0 244 75.4
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 7.4e-116 421.0 230 79.6
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 9.7e-116 420.6 231 79.7
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 9.7e-116 420.6 226 83.2
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.7e-115 419.9 244 76.6
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.7e-115 419.9 234 79.5
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.2e-115 419.5 252 77.0
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 2.8e-115 419.1 243 77.8
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 3.7e-115 418.7 244 75.0
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 3.7e-115 418.7 244 75.0
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 4.8e-115 418.3 252 76.6
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 6.3e-115 417.9 230 78.7
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 6.3e-115 417.9 263 73.8
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 8.2e-115 417.5 244 76.2
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 8.2e-115 417.5 232 78.0
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.1e-114 417.2 255 73.7
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.1e-114 417.2 236 79.2
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.4e-114 416.0 252 76.2
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.4e-114 416.0 244 77.5
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 5.3e-114 414.8 227 79.7
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 7.0e-114 414.5 244 75.8
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.2e-113 413.7 244 75.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.2e-113 413.7 244 75.8
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 2.6e-113 412.5 229 77.7
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 3.5e-113 412.1 243 74.5
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.0e-112 410.6 245 76.3
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 2.9e-112 409.1 250 72.4
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 3.8e-112 408.7 232 77.2
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 3.8e-112 408.7 232 78.4
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 6.5e-112 407.9 242 74.8
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.5e-111 406.8 230 78.7
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 4.2e-111 405.2 230 79.1
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 7.2e-111 404.4 230 78.3
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 2.1e-110 402.9 241 73.9
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.0e-109 400.6 265 70.9
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-108 396.0 241 73.0
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 7.5e-108 394.4 246 73.2
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 3.7e-107 392.1 248 69.4
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 3.7e-107 392.1 257 71.6
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.7e-105 386.0 228 74.1
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.7e-104 383.3 230 74.8
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 2.8e-99 365.9 203 81.3
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.8e-96 355.5 238 66.4
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 5.0e-96 355.1 233 67.0
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.9e-95 353.2 223 70.0
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 9.5e-95 350.9 235 67.7
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 6.1e-94 348.2 256 62.5
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 2.6e-92 342.8 241 64.3
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 1.7e-91 340.1 243 63.4
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.5e-87 327.0 259 62.2
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.4e-85 320.5 226 65.5
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 9.2e-82 307.8 156 84.0
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.5e-81 305.8 156 85.9
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.3e-80 303.9 166 83.7
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 1.4e-61 240.7 159 67.3
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 2.6e-52 209.9 218 48.2
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.2e-51 206.8 228 48.2
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 4.6e-49 199.1 216 51.4
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.5e-39 167.5 89 84.3
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 5.1e-32 142.5 107 65.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 6.9e-29 132.1 116 56.9
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.7e-25 120.2 149 45.6
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 7.4e-15 85.5 51 66.7
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 4.5e-12 76.3 65 56.9


User provided reference genes

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