Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 7.2e-231 803.5 394 100.0
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 2.0e-177 625.9 398 78.1
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 6.0e-177 624.4 395 77.2
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 5.0e-176 621.3 399 76.4
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 3.3e-175 618.6 399 75.4
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 1.6e-174 616.3 355 83.7
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 1.6e-174 616.3 355 82.5
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 2.8e-174 615.5 355 83.4
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 8.1e-174 614.0 355 82.8
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 1.1e-173 613.6 380 79.5
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 2.3e-173 612.5 354 82.5
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 4.0e-173 611.7 355 82.8
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 5.2e-173 611.3 355 83.4
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 6.8e-173 610.9 399 75.7
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 8.9e-173 610.5 355 82.5
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 8.9e-173 610.5 353 83.6
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 8.9e-173 610.5 355 83.1
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 9.8e-172 607.1 349 83.7
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 2.2e-171 605.9 355 81.1
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 2.2e-171 605.9 355 80.8
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 3.7e-171 605.1 355 80.8
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 3.7e-171 605.1 347 84.1
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 6.4e-171 604.4 391 74.7
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 8.3e-171 604.0 355 80.8
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 1.9e-170 602.8 355 82.3
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 1.9e-170 602.8 371 79.8
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 2.4e-170 602.4 404 75.0
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 3.2e-170 602.1 354 81.9
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 3.2e-170 602.1 356 81.5
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 4.1e-170 601.7 354 81.4
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 5.4e-170 601.3 355 80.3
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 9.2e-170 600.5 355 80.6
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.2e-169 600.1 353 80.5
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 1.2e-169 600.1 350 82.0
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 1.6e-169 599.7 355 80.8
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 2.7e-169 599.0 345 83.5
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 4.6e-169 598.2 389 75.3
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 7.8e-169 597.4 347 82.1
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 1.3e-168 596.7 400 74.2
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 3.0e-168 595.5 394 74.9
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 3.0e-168 595.5 354 80.5
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 3.0e-168 595.5 354 79.1
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 3.0e-168 595.5 355 80.8
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 3.9e-168 595.1 355 79.7
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 8.6e-168 594.0 393 74.6
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 1.5e-167 593.2 350 81.1
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 1.9e-167 592.8 387 74.2
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.9e-167 592.8 351 80.9
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.9e-167 592.8 344 82.0
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 1.9e-167 592.8 347 80.4
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 2.5e-167 592.4 349 80.5
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 2.5e-167 592.4 346 80.6
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 2.5e-167 592.4 348 81.6
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 3.3e-167 592.0 356 80.6
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 3.3e-167 592.0 354 78.8
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 4.3e-167 591.7 377 75.3
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 4.3e-167 591.7 360 79.2
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 4.3e-167 591.7 378 77.0
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 5.6e-167 591.3 381 75.3
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 5.6e-167 591.3 353 79.9
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 7.3e-167 590.9 353 79.9
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 9.5e-167 590.5 344 82.0
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 1.2e-166 590.1 354 78.5
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 2.8e-166 589.0 377 75.9
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 2.8e-166 589.0 347 81.3
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 2.8e-166 589.0 360 78.3
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.8e-166 589.0 344 81.4
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 3.6e-166 588.6 344 81.7
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 6.2e-166 587.8 378 76.2
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 1.1e-165 587.0 355 78.3
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.8e-165 586.3 344 81.4
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 1.2e-164 583.6 354 77.1
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 2.0e-164 582.8 348 79.0
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 2.6e-164 582.4 354 78.2
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 2.6e-164 582.4 356 78.9
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 3.4e-164 582.0 332 81.6
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 4.4e-164 581.6 353 78.5
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 4.4e-164 581.6 327 84.4
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 5.8e-164 581.3 332 81.6
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 7.6e-164 580.9 361 77.6
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 2.9e-163 578.9 345 80.0
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 3.8e-163 578.6 332 80.7
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 8.4e-163 577.4 358 77.4
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 1.1e-162 577.0 354 78.0
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.4e-162 575.9 399 71.7
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 5.4e-162 574.7 354 77.7
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 5.4e-162 574.7 395 71.1
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 2.7e-161 572.4 415 69.6
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 6.0e-161 571.2 353 78.2
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 6.0e-161 571.2 354 76.6
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 1.0e-160 570.5 355 77.5
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 9.6e-159 563.9 348 76.7
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 1.6e-158 563.1 319 83.1
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 2.8e-158 562.4 350 76.6
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 3.6e-158 562.0 353 75.4
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 3.0e-152 542.3 352 74.4
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 9.3e-146 520.8 338 74.0
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 1.2e-145 520.4 331 75.5
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 8.7e-144 514.2 352 72.2
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 8.7e-144 514.2 356 68.3
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 2.8e-142 509.2 330 72.1
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 2.4e-141 506.1 400 67.8
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 4.0e-141 505.4 330 73.3
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 9.9e-140 500.7 330 70.3
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 7.9e-137 491.1 351 65.8
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 4.9e-131 471.9 355 67.6
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 1.1e-130 470.7 354 67.5
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 6.9e-125 451.4 329 62.6
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 2.1e-121 439.9 377 61.3
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 3.1e-117 426.0 285 74.4
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 5.9e-116 421.8 376 57.2
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 2.7e-113 412.9 248 81.5
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 4.8e-110 402.1 237 80.2
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 4.1e-109 399.1 328 56.7
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 6.9e-109 398.3 254 75.2
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 1.5e-103 380.6 253 70.4
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 6.3e-102 375.2 327 56.9
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 6.1e-97 358.6 371 50.1
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.5e-71 274.2 287 46.3
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 9.5e-66 255.0 179 72.1
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 8.9e-64 248.4 165 72.1
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 1.2e-60 238.0 160 70.6
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 5.2e-48 196.1 179 59.2
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 1.5e-42 177.9 131 67.9
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 8.4e-14 82.4 59 71.2
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 1.6e-12 78.2 90 45.6
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 1.6e-12 78.2 90 45.6
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 3.7e-09 67.0 35 80.0


User provided reference genes

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