Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 3.1e-75 285.0 144 100.0
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 2.8e-47 192.2 141 71.6
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 3.4e-45 185.3 133 69.9
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 5.8e-45 184.5 133 70.7
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 9.8e-45 183.7 132 72.0
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 1.3e-44 183.3 133 72.2
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.3e-44 183.3 132 73.5
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 2.9e-44 182.2 125 77.6
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.1e-43 180.3 124 73.4
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 7.0e-43 177.6 133 69.2
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 2.7e-42 175.6 124 68.5
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.5e-42 175.3 134 68.7
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 4.6e-42 174.9 129 69.8
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 6.0e-42 174.5 132 68.9
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.7e-41 172.9 133 70.7
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 1.7e-41 172.9 129 69.0
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 2.3e-41 172.6 124 71.8
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 6.6e-41 171.0 132 67.4
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.6e-41 171.0 134 67.2
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.5e-40 169.9 129 69.0
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.5e-40 169.9 135 61.5
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.9e-40 169.5 127 70.9
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 1.9e-40 169.5 125 74.4
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 2.5e-40 169.1 131 67.2
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 2.5e-40 169.1 129 67.4
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 4.3e-40 168.3 125 68.0
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 5.6e-40 167.9 128 69.5
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 7.3e-40 167.5 130 69.2
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 9.5e-40 167.2 129 69.0
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.5e-40 167.2 136 67.6
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.2e-39 166.8 137 64.2
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.2e-39 166.8 129 67.4
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.2e-39 166.8 124 71.0
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.6e-39 166.4 124 71.0
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 1.6e-39 166.4 124 71.0
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.6e-39 166.4 131 65.6
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.6e-39 166.4 129 67.4
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.1e-39 166.0 129 67.4
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 2.1e-39 166.0 128 64.8
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 2.1e-39 166.0 130 63.1
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 2.8e-39 165.6 132 71.2
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 2.8e-39 165.6 157 60.5
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 3.6e-39 165.2 127 67.7
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 3.6e-39 165.2 135 63.7
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 4.7e-39 164.9 134 66.4
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 6.2e-39 164.5 128 64.8
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.8e-38 162.9 129 68.2
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 1.8e-38 162.9 124 67.7
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 1.8e-38 162.9 141 61.0
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 2.3e-38 162.5 124 67.7
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 2.3e-38 162.5 132 65.2
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 3.1e-38 162.2 115 73.0
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 3.1e-38 162.2 130 66.9
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 4.0e-38 161.8 127 67.7
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.0e-38 161.8 127 68.5
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 6.8e-38 161.0 146 60.3
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 6.8e-38 161.0 125 68.0
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 8.9e-38 160.6 132 63.6
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 8.9e-38 160.6 125 65.6
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 8.9e-38 160.6 125 65.6
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 8.9e-38 160.6 130 61.5
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.5e-37 159.8 131 65.6
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.0e-37 159.5 125 64.8
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.6e-37 159.1 130 61.5
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 2.6e-37 159.1 135 63.7
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 2.6e-37 159.1 127 67.7
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 7.5e-37 157.5 125 67.2
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 9.9e-37 157.1 130 61.5
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 9.9e-37 157.1 129 65.1
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.7e-36 156.4 126 65.9
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 2.9e-36 155.6 122 65.6
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 3.7e-36 155.2 131 62.6
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 3.7e-36 155.2 137 64.2
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 3.7e-36 155.2 161 55.9
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 4.9e-36 154.8 125 64.0
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 4.9e-36 154.8 123 65.0
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.1e-35 153.7 130 60.0
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.1e-35 153.7 124 61.3
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 1.1e-35 153.7 127 63.8
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.4e-35 153.3 143 59.4
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.4e-35 153.3 143 59.4
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 1.9e-35 152.9 128 60.2
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.9e-35 152.9 124 62.1
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.9e-35 152.9 128 63.3
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 2.4e-35 152.5 135 62.2
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 2.4e-35 152.5 131 61.8
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 7.1e-35 151.0 128 59.4
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 1.6e-34 149.8 119 64.7
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.6e-34 149.8 128 63.3
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.6e-34 149.8 131 63.4
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.6e-34 149.8 132 59.8
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 4.6e-34 148.3 113 69.9
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 1.3e-33 146.7 134 60.4
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 2.3e-33 146.0 113 66.4
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 3.9e-33 145.2 132 57.6
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 5.1e-33 144.8 124 59.7
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 8.6e-33 144.1 130 56.2
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.1e-32 143.7 124 58.9
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.5e-32 143.3 121 66.1
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.9e-32 142.9 131 56.5
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 2.5e-32 142.5 128 60.2
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 2.5e-32 142.5 127 61.4
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.3e-32 141.7 126 60.3
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.6e-32 141.4 95 76.8
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 5.6e-32 141.4 95 76.8
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 7.3e-32 141.0 131 58.0
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 7.3e-32 141.0 131 58.0
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 7.3e-32 141.0 132 58.3
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.2e-31 140.2 114 63.2
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.2e-31 140.2 114 63.2
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.6e-31 139.8 114 64.0
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.6e-31 139.8 120 65.8
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.6e-31 139.8 123 61.0
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 3.6e-31 138.7 114 63.2
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 3.6e-31 138.7 114 62.3
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 6.2e-31 137.9 102 68.6
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 8.1e-31 137.5 131 55.0
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 1.4e-30 136.7 128 60.9
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.5e-29 133.3 107 62.6
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.0e-29 132.9 94 70.2
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.3e-28 130.2 111 57.7
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 2.9e-28 129.0 128 54.7
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 1.1e-27 127.1 102 66.7
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.4e-27 125.9 113 57.5
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 2.8e-23 112.5 143 42.7
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 4.6e-18 95.1 88 59.1
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.7e-17 93.2 104 50.0
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 5.1e-17 91.7 83 57.8
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.1e-16 90.5 128 43.8
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 4.3e-16 88.6 90 56.7
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 5.6e-16 88.2 127 43.3
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.6e-15 86.7 73 60.3
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.4e-14 82.8 55 72.7
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 1.2e-13 80.5 77 54.5
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.2e-13 80.5 77 54.5
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 1.2e-13 80.5 77 54.5
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 1.5e-13 80.1 64 62.5
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 7.6e-13 77.8 109 43.1
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 7.6e-13 77.8 86 53.5
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 4.9e-12 75.1 89 47.2
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 1.1e-11 73.9 44 84.1
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 9.3e-11 70.9 64 56.2
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 2.1e-10 69.7 102 36.3
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 3.5e-10 68.9 104 40.4
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.8e-09 66.6 101 40.6
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.8e-09 66.6 69 52.2
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.9e-08 63.2 108 38.0
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 2.5e-08 62.8 71 49.3
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 9.6e-08 60.8 68 52.9
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 2.4e-06 56.2 101 36.6
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 6.9e-06 54.7 39 71.8
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 9.0e-06 54.3 105 35.2


User provided reference genes

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