Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 3.6e-172 608.2 325 100.0
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 3.6e-95 352.4 326 61.3
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 4.0e-94 349.0 316 64.9
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 5.8e-93 345.1 322 61.8
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.3e-92 344.0 321 62.0
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 6.4e-92 341.7 323 62.5
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 2.4e-91 339.7 321 60.7
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 5.4e-91 338.6 321 61.4
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 7.0e-91 338.2 326 61.7
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.6e-90 337.0 321 62.0
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.7e-90 336.3 324 61.4
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 3.5e-90 335.9 321 61.1
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 3.5e-90 335.9 321 61.4
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.3e-89 333.2 328 60.7
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 5.0e-89 332.0 324 61.1
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 5.0e-89 332.0 325 60.3
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.0e-89 332.0 325 60.3
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.0e-89 332.0 325 60.0
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.0e-89 332.0 325 60.3
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 8.6e-89 331.3 335 57.6
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.5e-88 330.5 321 60.4
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.6e-87 327.0 330 60.9
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 4.7e-87 325.5 327 60.9
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.1e-86 324.3 321 60.1
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.5e-85 320.5 321 59.8
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 2.0e-85 320.1 321 57.9
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 3.4e-85 319.3 325 59.4
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.5e-85 318.2 324 58.0
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.7e-84 317.0 320 59.4
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 2.9e-84 316.2 325 57.2
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 8.3e-84 314.7 322 60.6
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.1e-83 314.3 322 60.6
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.4e-83 313.9 325 60.0
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 3.2e-83 312.8 322 58.4
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 7.1e-83 311.6 348 54.6
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 9.2e-83 311.2 329 57.8
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.2e-82 310.8 322 59.0
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.2e-82 310.8 321 58.6
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 7.8e-82 308.1 329 56.2
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.0e-81 307.8 317 57.7
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.3e-81 306.6 321 59.2
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.3e-81 306.6 330 57.9
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 8.6e-81 304.7 321 57.9
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.9e-80 303.5 327 58.4
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 4.3e-80 302.4 321 59.8
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 4.3e-80 302.4 349 54.4
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 4.3e-80 302.4 328 57.9
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 5.6e-80 302.0 323 55.7
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.6e-79 300.4 323 56.3
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.4e-78 297.4 321 56.7
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.4e-78 297.4 327 57.8
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.4e-78 297.4 325 56.3
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.3e-78 296.6 321 56.1
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.1e-78 296.2 323 56.3
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 3.1e-78 296.2 335 54.9
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 5.2e-78 295.4 271 64.2
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 8.9e-78 294.7 323 56.3
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.6e-77 293.1 371 50.4
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 4.4e-77 292.4 325 54.2
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 9.9e-77 291.2 335 52.8
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.3e-76 290.8 332 53.9
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 2.2e-76 290.0 326 56.1
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 4.9e-76 288.9 328 55.2
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 8.4e-76 288.1 329 55.0
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.9e-75 287.0 321 53.6
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 2.4e-75 286.6 322 56.2
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 2.4e-75 286.6 317 53.3
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 4.1e-75 285.8 325 54.2
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 7.1e-75 285.0 326 53.7
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 9.2e-75 284.6 326 53.7
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.7e-74 283.1 324 53.7
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.7e-74 283.1 323 57.6
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 2.7e-74 283.1 323 54.5
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 2.7e-74 283.1 318 56.3
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.0e-73 281.2 229 68.6
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.7e-73 280.4 325 54.2
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 1.5e-72 277.3 323 54.5
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.5e-72 277.3 324 55.9
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.5e-72 277.3 322 55.9
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.8e-71 273.1 326 55.5
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 6.2e-71 271.9 308 55.8
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 8.1e-71 271.6 328 55.5
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 8.1e-71 271.6 328 55.5
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.4e-70 270.8 325 54.8
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.8e-70 270.4 324 52.5
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.8e-70 270.4 322 52.5
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 3.1e-70 269.6 328 54.9
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 5.2e-70 268.9 292 55.8
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 8.9e-70 268.1 323 50.5
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 1.2e-69 267.7 324 52.5
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.6e-69 266.5 321 53.0
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 7.6e-69 265.0 395 46.3
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.2e-68 263.5 299 53.5
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 3.8e-68 262.7 332 52.1
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.4e-67 260.8 360 48.9
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.4e-67 260.8 323 52.9
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 7.1e-67 258.5 318 53.5
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.3e-65 253.4 270 58.5
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 6.6e-65 251.9 332 49.1
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 7.3e-64 248.4 322 52.8
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-63 247.7 317 50.5
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.3e-63 247.7 329 50.5
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 4.8e-63 245.7 334 48.5
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.0e-62 242.7 299 52.2
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 4.0e-62 242.7 295 53.6
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 7.6e-61 238.4 300 55.0
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 7.6e-61 238.4 232 60.8
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.8e-60 236.1 328 47.6
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.8e-60 236.1 328 47.6
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.1e-59 234.6 296 51.7
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 3.2e-59 233.0 324 49.7
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 7.1e-59 231.9 327 47.1
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 9.3e-59 231.5 324 48.8
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 2.7e-58 229.9 326 48.2
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.9e-57 226.1 296 52.4
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 6.7e-57 225.3 334 45.8
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 3.3e-56 223.0 157 75.2
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.6e-55 220.7 293 51.9
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 2.1e-55 220.3 321 46.7
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.3e-52 211.1 293 51.2
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 4.2e-51 206.1 357 42.3
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.3e-49 201.1 333 42.6
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 2.3e-49 200.3 332 42.5
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 3.1e-46 189.9 292 46.6
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 1.6e-42 177.6 209 54.1
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 5.7e-40 169.1 214 52.8
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 3.7e-39 166.4 191 54.5
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.8e-39 166.0 377 35.0
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.8e-38 164.1 249 47.4
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 5.3e-38 162.5 375 36.3
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-35 154.5 206 49.0
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-35 154.5 137 64.2
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 4.2e-35 152.9 322 41.6
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 5.5e-27 125.9 448 31.5
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.3e-20 104.8 65 76.9
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 6.5e-20 102.4 65 76.9
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 5.5e-19 99.4 234 38.9
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 9.4e-19 98.6 64 75.0
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.8e-17 94.4 91 63.7
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-15 88.2 103 56.3
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.5e-11 73.9 146 41.1
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 8.0e-10 68.9 49 69.4
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.6e-08 63.9 51 60.8
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 4.8e-07 59.7 140 37.1
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 1.8e-06 57.8 36 75.0


User provided reference genes

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