Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 4.8e-239 830.9 454 100.0
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.0e-140 504.2 447 68.7
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.8e-140 503.4 447 68.0
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 2.6e-136 489.6 458 66.2
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 5.9e-136 488.4 458 67.9
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.2e-135 486.5 436 69.3
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.1e-131 474.2 460 65.0
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.1e-131 474.2 469 64.0
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 7.4e-131 471.5 461 65.1
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 2.8e-130 469.5 442 66.3
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.4e-129 467.2 461 65.1
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 4.1e-129 465.7 458 64.4
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 1.2e-128 464.2 456 64.9
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 7.7e-128 461.5 449 63.9
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.2e-127 459.9 457 64.3
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 2.9e-127 459.5 457 64.8
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.9e-126 456.8 461 64.6
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 4.2e-126 455.7 467 64.7
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 5.5e-126 455.3 458 64.4
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 5.5e-126 455.3 455 64.8
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 4.7e-125 452.2 455 64.0
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 8.8e-124 448.0 452 64.4
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.2e-123 447.6 460 62.8
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.2e-123 447.6 415 66.3
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 2.6e-123 446.4 460 62.8
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 2.6e-123 446.4 458 65.3
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 3.3e-123 446.0 464 62.9
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 4.4e-123 445.7 457 62.8
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 4.4e-123 445.7 462 63.4
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 7.5e-123 444.9 460 62.6
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.7e-122 443.7 452 63.9
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.8e-122 442.2 460 62.2
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 2.7e-120 436.4 461 62.5
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 4.5e-120 435.6 405 65.9
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 5.0e-119 432.2 378 69.8
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 6.5e-119 431.8 475 59.6
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 1.1e-118 431.0 493 55.4
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 1.9e-118 430.3 414 64.5
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 4.2e-118 429.1 454 62.3
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 1.2e-117 427.6 414 64.0
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 1.6e-117 427.2 414 64.0
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 3.6e-117 426.0 387 66.9
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.4e-116 424.1 451 60.8
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 2.3e-116 423.3 456 61.6
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 2.0e-115 420.2 457 60.0
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 3.4e-115 419.5 421 64.4
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.7e-114 417.2 387 65.9
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 6.3e-114 415.2 447 57.5
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 1.1e-113 414.5 467 57.8
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 4.1e-113 412.5 458 58.1
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 2.7e-112 409.8 470 58.3
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 2.7e-112 409.8 447 61.3
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 5.9e-112 408.7 328 75.0
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 5.9e-112 408.7 437 61.8
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 5.9e-112 408.7 463 57.2
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.0e-111 407.9 328 75.6
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.7e-111 407.1 453 60.5
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 2.9e-111 406.4 418 61.5
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 6.6e-111 405.2 437 61.1
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 8.6e-111 404.8 324 77.5
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.1e-110 404.4 416 64.2
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 1.1e-110 404.4 395 65.6
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.5e-110 404.1 400 63.0
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 2.5e-110 403.3 372 66.9
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 3.3e-110 402.9 382 66.5
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 4.2e-110 402.5 332 72.6
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 7.2e-110 401.7 454 60.8
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 7.2e-110 401.7 439 62.2
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.2e-109 401.0 451 60.3
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 1.2e-109 401.0 462 58.7
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 3.6e-109 399.4 442 60.6
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 3.6e-109 399.4 312 78.5
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 4.7e-109 399.1 348 70.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 1.8e-108 397.1 440 62.0
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 3.0e-108 396.4 438 61.9
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.2e-108 395.6 319 76.5
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.2e-107 394.4 454 59.3
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.2e-107 394.4 454 59.3
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.0e-107 393.7 403 62.3
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 3.4e-107 392.9 460 56.5
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 7.5e-107 391.7 439 61.7
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 7.5e-107 391.7 439 61.7
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 6.3e-106 388.7 460 56.7
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 8.3e-106 388.3 453 57.4
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 4.1e-105 386.0 406 63.3
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 5.4e-105 385.6 263 79.5
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 2.0e-104 383.6 447 59.1
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 5.9e-104 382.1 427 60.2
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.0e-103 381.3 328 70.4
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 3.8e-103 379.4 292 79.5
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.2e-101 374.4 364 64.8
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 8.9e-100 368.2 360 66.1
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 6.4e-98 362.1 377 61.8
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 2.4e-97 360.1 298 66.8
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 2.7e-96 356.7 321 69.2
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.5e-94 350.1 403 58.1
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 2.1e-93 347.1 405 59.5
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 3.6e-93 346.3 323 69.0
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 3.1e-92 343.2 408 56.4
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 3.9e-87 326.2 254 69.7
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 5.8e-83 312.4 450 51.1
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 7.5e-83 312.0 380 56.3
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 2.1e-80 303.9 372 57.5
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 3.4e-75 286.6 436 44.3
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 7.3e-70 268.9 228 68.9
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.0e-67 260.8 196 73.5
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 4.3e-62 243.0 276 60.5
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 3.8e-58 229.9 328 50.6
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.6e-56 223.0 326 52.5
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 7.9e-56 222.2 346 50.0
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 9.0e-52 208.8 314 48.7
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 1.3e-50 204.9 313 47.9
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 4.9e-50 203.0 319 48.6
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.1e-49 201.8 241 50.2
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 5.1e-47 193.0 136 75.7
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 3.1e-44 183.7 238 57.1
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 2.5e-41 174.1 312 45.5
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 3.8e-34 150.2 123 68.3
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 3.2e-33 147.1 204 41.7
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 4.3e-30 136.7 77 90.9
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 7.4e-22 109.4 156 51.3
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 7.7e-19 99.4 60 81.7
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 5.5e-17 93.2 163 37.4
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.7e-10 71.6 101 47.5
EL10Ac4g08098 Beta vulgaris HOM05D006243 ORTHO05D007688 1.5e-06 58.5 35 80.0


User provided reference genes

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