Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 3.7e-146 521.5 269 100.0
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 1.1e-78 297.4 247 67.2
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.5e-75 287.0 246 67.1
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 1.5e-75 287.0 248 66.1
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 5.0e-74 282.0 243 66.3
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 1.4e-73 280.4 249 64.7
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 2.5e-73 279.6 248 65.7
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 4.2e-73 278.9 248 66.1
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 1.2e-72 277.3 252 63.1
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 2.3e-71 273.1 250 65.2
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 5.1e-71 271.9 247 64.4
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 6.7e-71 271.6 232 65.1
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 6.7e-71 271.6 251 63.3
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 1.9e-70 270.0 249 63.1
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 4.3e-70 268.9 220 67.3
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 2.8e-69 266.2 250 64.4
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 6.3e-69 265.0 247 64.0
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.1e-68 264.2 247 61.1
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 1.1e-68 264.2 245 62.9
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.4e-68 263.8 250 63.6
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 2.4e-68 263.1 252 61.9
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.1e-68 262.7 250 63.6
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 6.9e-68 261.5 253 61.7
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 6.9e-68 261.5 253 61.7
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 9.1e-68 261.2 251 63.3
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 9.1e-68 261.2 248 62.9
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 1.5e-67 260.4 247 60.7
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 2.0e-67 260.0 252 62.7
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 3.4e-67 259.2 234 63.2
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 3.4e-67 259.2 247 61.1
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 4.5e-67 258.8 247 60.3
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 1.0e-66 257.7 252 61.9
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 1.3e-66 257.3 247 61.1
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.2e-66 256.5 264 61.0
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.2e-66 256.5 264 61.0
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 2.9e-66 256.1 250 62.8
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.1e-65 254.2 246 60.6
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.1e-65 254.2 247 61.9
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.9e-65 253.4 251 61.8
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.5e-65 253.1 251 61.8
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.5e-65 253.1 224 65.2
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 3.2e-65 252.7 250 61.6
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 7.2e-65 251.5 249 61.8
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 9.4e-65 251.1 247 60.3
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 9.4e-65 251.1 264 59.8
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 9.4e-65 251.1 248 58.1
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 1.6e-64 250.4 231 63.6
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.6e-64 250.4 259 56.8
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 3.6e-64 249.2 254 61.4
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 3.6e-64 249.2 251 59.4
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.0e-63 247.7 250 61.6
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 1.4e-63 247.3 254 61.0
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 1.8e-63 246.9 249 61.4
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 5.1e-63 245.4 247 59.9
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 8.8e-63 244.6 247 59.5
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 8.8e-63 244.6 247 59.5
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 2.0e-62 243.4 238 59.7
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 3.3e-62 242.7 249 55.8
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.7e-61 240.4 250 60.0
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 2.2e-61 240.0 248 59.3
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 2.2e-61 240.0 226 61.1
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 2.8e-61 239.6 249 55.0
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.8e-61 239.6 239 58.2
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 8.2e-61 238.0 248 56.9
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 8.2e-61 238.0 249 57.8
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.1e-60 237.7 250 60.0
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 1.8e-60 236.9 239 59.0
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 6.9e-60 235.0 245 58.4
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 9.1e-60 234.6 245 57.1
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 2.0e-59 233.4 248 58.1
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 4.5e-59 232.3 251 58.2
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 1.3e-58 230.7 249 57.8
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 3.8e-58 229.2 249 57.8
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 6.5e-58 228.4 239 57.3
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 1.1e-57 227.6 248 56.0
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.9e-57 226.9 249 57.8
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 2.5e-57 226.5 220 60.5
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.2e-57 226.1 246 54.5
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 4.2e-57 225.7 212 66.0
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 7.2e-57 224.9 248 56.5
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 6.1e-56 221.9 181 68.0
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.0e-55 221.1 247 55.1
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.0e-55 221.1 245 53.5
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.8e-55 220.3 227 57.3
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.3e-55 219.9 241 53.1
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.3e-55 219.9 249 53.4
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 1.5e-54 217.2 250 52.8
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 5.7e-54 215.3 249 55.4
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.4e-52 210.7 242 55.4
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 1.4e-52 210.7 242 55.4
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.8e-52 210.3 268 50.0
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 2.4e-52 209.9 247 54.7
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 5.3e-52 208.8 147 75.5
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 5.3e-52 208.8 246 53.3
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.6e-51 207.2 243 51.4
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 1.7e-50 203.8 246 52.8
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 1.1e-49 201.1 245 51.4
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 2.5e-49 199.9 245 51.4
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 2.5e-49 199.9 245 51.4
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 8.0e-48 194.9 179 63.7
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 2.0e-46 190.3 143 70.6
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 9.1e-44 181.4 247 48.2
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.9e-41 173.7 237 46.8
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 3.2e-41 172.9 121 72.7
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 9.8e-38 161.4 293 38.9
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 1.6e-35 154.1 153 58.8
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.0e-34 151.4 134 61.2
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 4.2e-33 146.0 122 64.8
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 8.8e-31 138.3 122 63.1
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 8.3e-29 131.7 189 45.0
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 2.4e-12 77.0 73 57.5
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 1.2e-11 74.7 184 34.2
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.0e-10 71.6 78 51.3
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 9.5e-09 65.1 107 41.1
CBR_g1094 Chara braunii HOM05D000032 ORTHO05D005217 8.1e-08 62.0 145 35.2
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 8.1e-08 62.0 55 58.2
MSTRG.19133 Avicennia marina HOM05D000032 ORTHO05D005217 4.4e-06 56.2 153 34.0


User provided reference genes

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