Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 3.4e-68 261.5 131 100.0
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 1.2e-54 216.5 126 81.7
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 6.2e-54 214.2 125 82.4
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.8e-53 212.6 126 79.4
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 2.3e-53 212.2 126 79.4
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 5.2e-53 211.1 124 79.8
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 8.9e-53 210.3 126 79.4
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.2e-52 209.9 126 79.4
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 2.6e-52 208.8 124 80.6
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 5.8e-52 207.6 126 77.8
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 7.6e-52 207.2 126 76.2
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 9.9e-52 206.8 130 76.9
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 9.9e-52 206.8 126 79.4
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 1.3e-51 206.5 124 78.2
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.3e-51 206.5 130 76.9
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 1.3e-51 206.5 126 76.2
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.3e-51 206.5 130 77.7
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 3.7e-51 204.9 126 77.0
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 3.7e-51 204.9 126 77.8
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 4.9e-51 204.5 126 76.2
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 8.4e-51 203.8 129 74.4
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 8.4e-51 203.8 126 75.4
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 1.9e-50 202.6 126 78.6
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 4.1e-50 201.4 127 72.4
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 4.1e-50 201.4 126 75.4
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 9.2e-50 200.3 128 72.7
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 9.2e-50 200.3 125 76.8
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 2.7e-49 198.7 134 71.6
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 3.5e-49 198.4 126 73.8
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 3.5e-49 198.4 126 76.2
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 4.6e-49 198.0 126 76.2
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 6.0e-49 197.6 124 72.6
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 6.0e-49 197.6 127 70.9
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 7.8e-49 197.2 126 74.6
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 1.0e-48 196.8 126 73.8
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 1.7e-48 196.1 124 75.8
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.7e-48 196.1 124 75.8
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.3e-48 195.7 126 73.8
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 2.3e-48 195.7 126 74.6
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 3.0e-48 195.3 130 73.1
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 3.9e-48 194.9 126 76.2
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 5.1e-48 194.5 124 73.4
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 6.6e-48 194.1 130 71.5
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 6.6e-48 194.1 126 72.2
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 6.6e-48 194.1 124 72.6
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 6.6e-48 194.1 126 71.4
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 6.6e-48 194.1 129 72.1
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 6.6e-48 194.1 126 74.6
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 1.1e-47 193.4 121 74.4
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 1.1e-47 193.4 126 71.4
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 1.5e-47 193.0 126 71.4
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 3.3e-47 191.8 124 72.6
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 3.3e-47 191.8 126 73.0
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 4.3e-47 191.4 129 70.5
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 4.3e-47 191.4 124 75.8
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 4.3e-47 191.4 125 70.4
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 5.6e-47 191.0 126 73.0
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 5.6e-47 191.0 126 72.2
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 5.6e-47 191.0 129 71.3
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 2.1e-46 189.1 129 70.5
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 2.8e-46 188.7 130 71.5
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 3.6e-46 188.3 130 71.5
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 3.6e-46 188.3 126 73.8
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 8.1e-46 187.2 130 70.0
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 8.1e-46 187.2 126 69.0
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 1.1e-45 186.8 129 68.2
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.1e-45 186.8 129 68.2
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.1e-45 185.3 126 68.3
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.1e-45 185.3 126 68.3
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 4.0e-45 184.9 127 70.1
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 4.0e-45 184.9 126 70.6
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 4.0e-45 184.9 131 68.7
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 6.8e-45 184.1 127 69.3
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 6.8e-45 184.1 126 68.3
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 8.9e-45 183.7 127 70.1
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 1.2e-44 183.3 127 69.3
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 1.2e-44 183.3 127 71.7
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 1.5e-44 183.0 130 67.7
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 2.6e-44 182.2 127 68.5
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 2.6e-44 182.2 127 68.5
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 2.6e-44 182.2 127 68.5
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 3.4e-44 181.8 124 71.0
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 5.8e-44 181.0 127 66.9
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 5.8e-44 181.0 127 68.5
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 7.6e-44 180.6 126 66.7
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 7.6e-44 180.6 125 68.0
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 9.9e-44 180.3 130 65.4
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 9.9e-44 180.3 127 66.9
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 9.9e-44 180.3 126 66.7
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 9.9e-44 180.3 126 66.7
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 9.9e-44 180.3 131 67.9
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 1.7e-43 179.5 127 66.1
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.7e-43 179.5 125 68.8
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 2.9e-43 178.7 124 67.7
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 3.8e-43 178.3 127 66.9
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 8.4e-43 177.2 124 66.1
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 1.4e-42 176.4 126 66.7
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 2.4e-42 175.6 136 65.4
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 4.2e-42 174.9 136 64.0
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 7.1e-42 174.1 136 64.7
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 7.1e-42 174.1 137 63.5
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 9.3e-42 173.7 151 57.0
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.2e-41 173.3 125 68.0
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 1.2e-41 173.3 126 67.5
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-41 173.3 134 64.9
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 1.2e-41 173.3 134 64.9
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 1.2e-41 173.3 126 65.1
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 1.6e-41 172.9 140 62.1
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 1.0e-40 170.2 165 53.9
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 1.1e-37 160.2 126 61.9
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.5e-36 156.4 124 62.9
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 2.2e-35 152.5 100 71.0
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.4e-34 149.8 125 58.4
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.2e-33 146.7 125 57.6
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 3.5e-33 145.2 95 71.6
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 4.6e-33 144.8 137 53.3
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 3.9e-32 141.7 124 55.6
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 1.5e-31 139.8 123 55.3
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.8e-30 135.6 124 57.3
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.4e-29 133.3 93 66.7
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 5.1e-24 114.8 62 83.9
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 5.1e-24 114.8 62 83.9
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 9.6e-23 110.5 62 82.3
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 3.7e-22 108.6 65 76.9
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 1.2e-20 103.6 62 75.8
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 2.6e-20 102.4 69 69.6
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 5.8e-20 101.3 75 68.0
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.7e-19 99.8 64 73.4
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 2.9e-19 99.0 68 69.1
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 1.4e-18 96.7 118 39.8
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.5e-18 95.9 68 67.6
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 9.3e-18 94.0 73 58.9
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 1.2e-17 93.6 64 64.1
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 2.7e-17 92.4 65 66.2
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 4.6e-17 91.7 65 64.6
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 6.0e-17 91.3 66 62.1
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 6.0e-17 91.3 64 68.8
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 2.3e-16 89.4 64 67.2
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 8.7e-16 87.4 74 55.4
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 1.4e-13 80.1 116 36.2
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.2e-12 77.0 53 71.7
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 2.6e-12 75.9 56 64.3
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.4e-10 70.1 62 48.4
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.5e-10 69.3 70 50.0
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 2.7e-09 65.9 110 30.0
PRCOL_00003180 Prasinoderma coloniale HOM05D000737 ORTHO05D000581 3.0e-08 62.4 108 32.4
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 3.9e-08 62.0 51 56.9
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 7.4e-07 57.8 58 39.7
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 4.8e-06 55.1 49 53.1


User provided reference genes

Program Settings