Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 1.2e-77 293.1 150 100.0
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 2.9e-15 85.9 109 54.1
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 3.8e-15 85.5 156 42.9
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 3.9e-12 75.5 144 39.6
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 6.7e-12 74.7 141 39.7
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 2.5e-11 72.8 173 39.3
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 5.7e-11 71.6 89 51.7
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 7.4e-11 71.2 66 59.1
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 7.4e-11 71.2 66 59.1
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 7.4e-11 71.2 66 59.1
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 8.2e-10 67.8 119 39.5
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 1.1e-09 67.4 75 54.7
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 3.1e-09 65.9 147 40.8
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 5.3e-09 65.1 140 40.0
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 5.3e-09 65.1 58 62.1
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.2e-08 63.9 62 58.1
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.2e-08 63.9 98 45.9
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.0e-08 63.2 49 63.3
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.6e-08 62.8 58 56.9
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 2.6e-08 62.8 98 44.9
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 4.5e-08 62.0 66 56.1
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 4.5e-08 62.0 70 58.6
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 5.9e-08 61.6 145 33.8
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 5.9e-08 61.6 96 44.8
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 5.9e-08 61.6 59 62.7
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 7.7e-08 61.2 77 49.4
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.0e-07 60.8 137 38.0
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 1.3e-07 60.5 56 60.7
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.3e-07 60.5 55 54.5
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 1.7e-07 60.1 61 52.5
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.7e-07 60.1 146 32.9
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.7e-07 60.1 64 56.2
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.9e-07 59.3 49 61.2
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.9e-07 59.3 54 53.7
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 3.8e-07 58.9 127 37.8
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.5e-07 58.2 49 59.2
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.5e-07 58.2 49 59.2
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 6.5e-07 58.2 114 37.7
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.1e-06 57.4 85 44.7
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.1e-06 57.4 63 52.4
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.4e-06 57.0 52 53.8
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.9e-06 56.6 101 42.6
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.9e-06 56.6 108 42.6
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.9e-06 56.6 108 42.6
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 2.5e-06 56.2 116 37.1
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 2.5e-06 56.2 140 35.0
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.5e-06 56.2 42 66.7
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.5e-06 56.2 101 41.6
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 2.5e-06 56.2 86 41.9
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 2.5e-06 56.2 62 51.6
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 2.5e-06 56.2 56 57.1
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 2.5e-06 56.2 57 54.4
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 2.5e-06 56.2 67 50.7
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 3.2e-06 55.8 83 44.6
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 3.2e-06 55.8 75 46.7
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 4.2e-06 55.5 115 42.6
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 4.2e-06 55.5 63 49.2
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 4.2e-06 55.5 95 41.1
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.5e-06 55.1 60 51.7
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 5.5e-06 55.1 54 57.4
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.5e-06 55.1 54 57.4
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.5e-06 55.1 138 36.2
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 5.5e-06 55.1 65 47.7
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.5e-06 55.1 80 43.8
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 7.2e-06 54.7 60 53.3
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 7.2e-06 54.7 56 51.8
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.4e-06 54.3 61 52.5


User provided reference genes

Program Settings