Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004470 Simmondsia chinensis HOM05D006056 ORTHO05D007136 1.1e-78 296.6 146 100.0
Hund13373 Selenicereus undatus HOM05D006056 ORTHO05D007136 3.5e-50 201.8 143 70.6
Actinidia10152 Actinidia chinensis HOM05D006056 ORTHO05D007136 1.3e-44 183.3 111 82.9
EL10Ac2g02787 Beta vulgaris HOM05D006056 ORTHO05D007136 1.7e-44 183.0 146 65.1
arahy.Tifrunner.gnm1.ann1.X1BBAM Arachis hypogaea HOM05D006056 ORTHO05D007136 2.9e-44 182.2 133 70.7
CiPaw.13G014800 Carya illinoinensis HOM05D006056 ORTHO05D007136 1.1e-43 180.3 151 66.9
arahy.Tifrunner.gnm1.ann1.6DS776 Arachis hypogaea HOM05D006056 ORTHO05D007136 1.9e-43 179.5 132 69.7
Haze_03023 Corylus avellana HOM05D006056 ORTHO05D007136 2.5e-43 179.1 151 63.6
Gohir.D10G193500 Gossypium hirsutum HOM05D006056 ORTHO05D007136 3.2e-43 178.7 141 65.2
Gorai.011G216600 Gossypium raimondii HOM05D006056 ORTHO05D007136 3.2e-43 178.7 141 65.2
Thecc.10G150600 Theobroma cacao HOM05D006056 ORTHO05D007136 3.2e-43 178.7 133 68.4
Dinv44692 Davidia involucrata HOM05D006056 ORTHO05D007136 7.1e-43 177.6 141 68.8
Cc08_g11260 Coffea canephora HOM05D006056 ORTHO05D007136 9.3e-43 177.2 136 70.6
Duzib106G1601 Durio zibethinus HOM05D006056 ORTHO05D007136 1.6e-42 176.4 136 67.6
Haze_03016 Corylus avellana HOM05D006056 ORTHO05D007136 2.7e-42 175.6 151 62.9
Duzib106G1426 Durio zibethinus HOM05D006056 ORTHO05D007136 2.7e-42 175.6 136 66.9
Duzib106G0937 Durio zibethinus HOM05D006056 ORTHO05D007136 4.6e-42 174.9 111 77.5
GSVIVG01036664001 Vitis vinifera HOM05D006056 ORTHO05D007136 4.6e-42 174.9 111 79.3
AUR62026890 Chenopodium quinoa HOM05D006056 ORTHO05D007136 6.0e-42 174.5 146 62.3
Psat5g221760 Pisum sativum HOM05D006056 ORTHO05D007136 6.0e-42 174.5 128 68.8
Actinidia06230 Actinidia chinensis HOM05D006056 ORTHO05D007136 7.9e-42 174.1 111 80.2
Manes.04G158100 Manihot esculenta HOM05D006056 ORTHO05D007136 1.3e-41 173.3 126 69.8
TWI38G2317 Tripterygium wilfordii HOM05D006056 ORTHO05D007136 1.3e-41 173.3 149 60.4
Cpa.g.sc2293.2 Carica papaya HOM05D006056 ORTHO05D007136 2.3e-41 172.6 137 65.7
Lalb_Chr04g0264131 Lupinus albus HOM05D006056 ORTHO05D007136 2.3e-41 172.6 101 83.2
Lsat_1_v5_gn_9_40260 Lactuca sativa HOM05D006056 ORTHO05D007136 3.9e-41 171.8 141 63.8
QL04p017566 Quercus lobata HOM05D006056 ORTHO05D007136 3.9e-41 171.8 154 60.4
HanXRQChr11g0341201 Helianthus annuus HOM05D006056 ORTHO05D007136 5.1e-41 171.4 141 66.0
BraA05t22856Z Brassica rapa HOM05D006056 ORTHO05D007136 8.7e-41 170.6 142 61.3
Prupe.2G039200 Prunus persica HOM05D006056 ORTHO05D007136 8.7e-41 170.6 132 68.2
CSS0027846 Camellia sinensis var. sinensis HOM05D006056 ORTHO05D007136 1.1e-40 170.2 114 73.7
Lalb_Chr01g0014891 Lupinus albus HOM05D006056 ORTHO05D007136 1.5e-40 169.9 137 64.2
AL3G17840 Arabidopsis lyrata HOM05D006056 ORTHO05D007136 1.9e-40 169.5 133 62.4
A05p41340 Brassica napus HOM05D006056 ORTHO05D007136 1.9e-40 169.5 142 60.6
C05p60560 Brassica napus HOM05D006056 ORTHO05D007136 1.9e-40 169.5 142 62.0
AT3G06730 Arabidopsis thaliana HOM05D006056 ORTHO05D007136 2.5e-40 169.1 129 65.9
Duzib114G0422 Durio zibethinus HOM05D006056 ORTHO05D007136 2.5e-40 169.1 111 73.0
Aa31LG5G17320 Aethionema arabicum HOM05D006056 ORTHO05D007136 3.3e-40 168.7 133 63.2
Migut.B01239 Erythranthe guttata HOM05D006056 ORTHO05D007136 3.3e-40 168.7 104 78.8
Medtr3g014240 Medicago truncatula HOM05D006056 ORTHO05D007136 4.3e-40 168.3 132 62.9
PGR044G1154 Punica granatum HOM05D006056 ORTHO05D007136 4.3e-40 168.3 122 68.0
BcaC05g30553 Brassica carinata HOM05D006056 ORTHO05D007136 5.7e-40 167.9 142 60.6
Carub.0003s0627 Capsella rubella HOM05D006056 ORTHO05D007136 5.7e-40 167.9 133 62.4
Potri.001G028500 Populus trichocarpa HOM05D006056 ORTHO05D007136 5.7e-40 167.9 107 75.7
CANSAT56G1604 Cannabis sativa HOM05D006056 ORTHO05D007136 7.4e-40 167.5 133 67.7
CiPaw.14G008500 Carya illinoinensis HOM05D006056 ORTHO05D007136 7.4e-40 167.5 138 66.7
Nn7g36738 Nelumbo nucifera HOM05D006056 ORTHO05D007136 7.4e-40 167.5 131 64.9
THA.LOC104826732 Tarenaya hassleriana HOM05D006056 ORTHO05D007136 7.4e-40 167.5 96 84.4
Atru.chr12.1257 Acer truncatum HOM05D006056 ORTHO05D007136 9.7e-40 167.2 123 69.1
Lj3g0018945 Lotus japonicus HOM05D006056 ORTHO05D007136 9.7e-40 167.2 140 64.3
vmacro13759 Vaccinium macrocarpon HOM05D006056 ORTHO05D007136 9.7e-40 167.2 109 76.1
BolC5t34710H Brassica oleracea HOM05D006056 ORTHO05D007136 1.3e-39 166.8 142 60.6
Eucgr.G03224 Eucalyptus grandis HOM05D006056 ORTHO05D007136 1.3e-39 166.8 90 86.7
Thhalv10021607m.g Eutrema salsugineum HOM05D006056 ORTHO05D007136 1.3e-39 166.8 93 82.8
Sp3g05700 Schrenkiella parvula HOM05D006056 ORTHO05D007136 2.2e-39 166.0 133 60.9
FAN10G2490 Fragaria x ananassa HOM05D006056 ORTHO05D007136 6.3e-39 164.5 103 75.7
Nitab4.5_0005808g0070 Nicotiana tabacum HOM05D006056 ORTHO05D007136 6.3e-39 164.5 138 62.3
MSTRG.16982 Avicennia marina HOM05D006056 ORTHO05D007136 8.2e-39 164.1 90 85.6
BNapus_Darmor_BZH_scaffold_117p00040 Brassica napus HOM05D006056 ORTHO05D007136 8.2e-39 164.1 139 59.0
RcHm_v2.0_Chr1g0325731 Rosa chinensis HOM05D006056 ORTHO05D007136 1.1e-38 163.7 103 74.8
ClCG08G010680 Citrullus lanatus HOM05D006056 ORTHO05D007136 1.4e-38 163.3 113 69.0
Hma1.2p1_0837F.1_g226030 Hydrangea macrophylla HOM05D006056 ORTHO05D007136 1.4e-38 163.3 90 87.8
Phvul.005G025600 Phaseolus vulgaris HOM05D006056 ORTHO05D007136 1.4e-38 163.3 140 60.0
BcaC09g47915 Brassica carinata HOM05D006056 ORTHO05D007136 1.8e-38 162.9 94 80.9
FAN03G2563 Fragaria x ananassa HOM05D006056 ORTHO05D007136 1.8e-38 162.9 103 73.8
Glyma.11G156500 Glycine max HOM05D006056 ORTHO05D007136 1.8e-38 162.9 145 59.3
Glyma.04G135300 Glycine max HOM05D006056 ORTHO05D007136 2.4e-38 162.5 90 84.4
TPR.G1448 Trifolium pratense HOM05D006056 ORTHO05D007136 3.1e-38 162.2 87 83.9
FAN01G1581 Fragaria x ananassa HOM05D006056 ORTHO05D007136 4.1e-38 161.8 133 62.4
FAN06G0497 Fragaria x ananassa HOM05D006056 ORTHO05D007136 4.1e-38 161.8 133 62.4
MD02G1283300 Malus domestica HOM05D006056 ORTHO05D007136 4.1e-38 161.8 118 69.5
BolC1t05590H Brassica oleracea HOM05D006056 ORTHO05D007136 5.3e-38 161.4 94 79.8
CsaV3_6G035850 Cucumis sativus L. HOM05D006056 ORTHO05D007136 5.3e-38 161.4 93 79.6
FvH4_7g03410 Fragaria vesca HOM05D006056 ORTHO05D007136 5.3e-38 161.4 103 74.8
Nitab4.5_0003481g0070 Nicotiana tabacum HOM05D006056 ORTHO05D007136 6.9e-38 161.0 135 62.2
BraA01t04419Z Brassica rapa HOM05D006056 ORTHO05D007136 9.0e-38 160.6 105 72.4
Ciclev10002629m.g Citrus clementina HOM05D006056 ORTHO05D007136 9.0e-38 160.6 90 80.0
Solyc01g096480.2 Solanum lycopersicum HOM05D006056 ORTHO05D007136 9.0e-38 160.6 100 80.0
Sopen01g040210 Solanum pennellii HOM05D006056 ORTHO05D007136 9.0e-38 160.6 91 83.5
MD07G1048800 Malus domestica HOM05D006056 ORTHO05D007136 1.5e-37 159.8 97 79.4
MELO3C011393.2 Cucumis melo HOM05D006056 ORTHO05D007136 2.0e-37 159.5 106 71.7
CAN.G1045.19 Capsicum annuum HOM05D006056 ORTHO05D007136 2.6e-37 159.1 111 72.1
Ca_12968_v3 Cicer arietinum L. HOM05D006056 ORTHO05D007136 2.6e-37 159.1 90 83.3
Rhsim07G0067800 Rhododendron simsii HOM05D006056 ORTHO05D007136 2.6e-37 159.1 109 70.6
PGSC0003DMG400005407 Solanum tuberosum HOM05D006056 ORTHO05D007136 2.6e-37 159.1 100 78.0
Gohir.A10G186600 Gossypium hirsutum HOM05D006056 ORTHO05D007136 3.4e-37 158.7 141 61.0
Hma1.2p1_0837F.1_g226040 Hydrangea macrophylla HOM05D006056 ORTHO05D007136 4.5e-37 158.3 86 88.4
Nn2g14790 Nelumbo nucifera HOM05D006056 ORTHO05D007136 4.5e-37 158.3 86 84.9
Peaxi162Scf00082g00120 Petunia axillaris HOM05D006056 ORTHO05D007136 4.5e-37 158.3 115 68.7
SGA_v2.0_scaffold124G33607 Striga asiatica HOM05D006056 ORTHO05D007136 5.9e-37 157.9 90 77.8
PSO339G3509 Papaver somniferum HOM05D006056 ORTHO05D007136 7.7e-37 157.5 130 64.6
Sed0016890 Sechium edule HOM05D006056 ORTHO05D007136 7.7e-37 157.5 88 78.4
PSO384G1577 Papaver somniferum HOM05D006056 ORTHO05D007136 1.3e-36 156.8 130 64.6
Actinidia12748 Actinidia chinensis HOM05D006056 ORTHO05D007136 6.5e-36 154.5 111 73.9
CDE05G0697 Ceratophyllum demersum HOM05D006056 ORTHO05D007136 2.1e-34 149.4 87 79.3
DCAR_031839 Daucus carota HOM05D006056 ORTHO05D007136 3.6e-34 148.7 135 61.5
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 4.6e-34 148.3 89 76.4
unitig_736.g22224 Utricularia gibba HOM05D006056 ORTHO05D007136 7.9e-34 147.5 87 75.9
Sabra01G0020900 Salix brachista HOM05D006056 ORTHO05D007136 1.5e-32 143.3 203 43.3
Os08g0378900 Oryza sativa ssp. japonica HOM05D006056 ORTHO05D007136 1.3e-31 140.2 81 77.8
MBI13_g23031_MAGBIO Magnolia biondii HOM05D006056 ORTHO05D007136 2.2e-31 139.4 91 74.7
ATR0782G243 Amborella trichopoda HOM05D006056 ORTHO05D007136 3.7e-31 138.7 119 64.7
HPP92_023265 Vanilla planifolia HOM05D002937 ORTHO05D003063 1.4e-30 136.7 103 67.0
HPP92_023300 Vanilla planifolia HOM05D002937 ORTHO05D003063 3.1e-30 135.6 98 67.3
Zm00001eb042600 Zea mays HOM05D006056 ORTHO05D007136 4.1e-30 135.2 80 75.0
Aqoxy1G00370 Aquilegia oxysepala HOM05D006056 ORTHO05D007136 5.9e-29 131.3 99 65.7
Medtr1g037680 Medicago truncatula HOM05D006056 ORTHO05D007136 1.7e-28 129.8 68 86.8
Cc00_g27250 Coffea canephora HOM05D006056 ORTHO05D007136 5.0e-28 128.3 110 63.6
CARHR081330 Cardamine hirsuta HOM05D006056 ORTHO05D007136 8.5e-28 127.5 68 85.3
VMungo1080G1125 Vigna mungo HOM05D006056 ORTHO05D007136 1.1e-27 127.1 100 62.0
Lj9A658G61 Lonicera japonica HOM05D006056 ORTHO05D007136 2.1e-26 122.9 68 82.4
MD05G1114000 Malus domestica HOM05D006056 ORTHO05D007136 2.4e-22 109.4 111 57.7
Pp3c1_18440 Physcomitrium patens HOM05D006056 ORTHO05D007136 9.1e-22 107.5 72 62.5
SalBow6G0599 Salvia bowleyana HOM05D006056 ORTHO05D007136 3.2e-19 99.0 67 67.2
AagrBONN_evm.TU.Sc2ySwM_117.3107 Anthoceros agrestis HOM05D006056 ORTHO05D007136 1.2e-18 97.1 103 48.5
CBR_g51450 Chara braunii HOM05D006056 ORTHO05D007136 2.3e-17 92.8 73 53.4
Mapoly0006s0285 Marchantia polymorpha HOM05D006056 ORTHO05D007136 3.0e-17 92.4 70 55.7
SMO146G0323 Selaginella moellendorffii HOM05D006056 ORTHO05D007136 1.1e-16 90.5 71 59.2
MCO07G215 Micromonas commoda HOM05D006056 ORTHO05D007136 7.7e-13 77.8 74 48.6
SEGI_00494 Sequoiadendron giganteum HOM05D006056 ORTHO05D007136 1.1e-11 73.9 54 53.7
Cre02.g142800 Chlamydomonas reinhardtii HOM05D006056 ORTHO05D007136 5.2e-09 65.1 60 43.3
Atru.chr11.1152 Acer truncatum HOM05D000803 ORTHO05D009288 4.4e-08 62.0 126 30.2
Potri.005G186800 Populus trichocarpa HOM05D000803 ORTHO05D001162 9.7e-08 60.8 118 37.3
VMungo0720G1024 Vigna mungo HOM05D000803 ORTHO05D009288 1.7e-07 60.1 59 45.8
SGA_v2.0_scaffold306G48029 Striga asiatica HOM05D000803 ORTHO05D009288 2.2e-07 59.7 101 35.6
Phvul.007G015500 Phaseolus vulgaris HOM05D000803 ORTHO05D009288 2.8e-07 59.3 59 45.8
ECA246G5126 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.7e-07 58.9 60 46.7
Sabra09G0076500 Salix brachista HOM05D000803 ORTHO05D001162 3.7e-07 58.9 139 26.6
MSTRG.13680 Avicennia marina HOM05D000803 ORTHO05D009288 6.3e-07 58.2 60 46.7
Migut.E00687 Erythranthe guttata HOM05D000803 ORTHO05D009288 6.3e-07 58.2 61 45.9
Migut.O00873 Erythranthe guttata HOM05D000803 ORTHO05D009288 6.3e-07 58.2 61 45.9
Cc00_g16790 Coffea canephora HOM05D000803 ORTHO05D009288 8.2e-07 57.8 112 30.4
Mapoly0022s0050 Marchantia polymorpha HOM05D000803 ORTHO05D009288 8.2e-07 57.8 50 48.0
Oeu006340.1 Olea europaea HOM05D000803 ORTHO05D009288 8.2e-07 57.8 61 42.6
Ah.05g169330 Amaranthus hybridus HOM05D000803 ORTHO05D001162 1.1e-06 57.4 95 37.9
DCAR_010094 Daucus carota HOM05D000803 ORTHO05D007008 1.1e-06 57.4 72 38.9
Duzib052G0208 Durio zibethinus HOM05D000803 ORTHO05D009288 1.1e-06 57.4 59 40.7
Psat6g233480 Pisum sativum HOM05D000803 ORTHO05D009288 1.4e-06 57.0 60 45.0
Potri.002G073000 Populus trichocarpa HOM05D000803 ORTHO05D001162 1.4e-06 57.0 118 36.4
Aa31LG10G3930 Aethionema arabicum HOM05D000803 ORTHO05D009288 1.8e-06 56.6 69 37.7
Glyma.10G285000 Glycine max HOM05D000803 ORTHO05D009288 1.8e-06 56.6 42 54.8
Glyma.20G104000 Glycine max HOM05D000803 ORTHO05D009288 1.8e-06 56.6 42 54.8
Lsat_1_v5_gn_3_36620 Lactuca sativa HOM05D000803 ORTHO05D009288 1.8e-06 56.6 50 50.0
PRCOL_00004653 Prasinoderma coloniale HOM05D006056 ORTHO05D007136 1.8e-06 56.6 72 37.5
Sabra05G0142700 Salix brachista HOM05D000803 ORTHO05D001162 1.8e-06 56.6 97 39.2
TAR622G1240 Trochodendron aralioides HOM05D000803 ORTHO05D009288 1.8e-06 56.6 128 29.7
Eucgr.J00880 Eucalyptus grandis HOM05D000803 ORTHO05D009288 2.4e-06 56.2 50 48.0
Lalb_Chr11g0066361 Lupinus albus HOM05D000803 ORTHO05D001162 3.1e-06 55.8 122 30.3
Nitab4.5_0001428g0120 Nicotiana tabacum HOM05D000803 ORTHO05D001162 3.1e-06 55.8 64 37.5
Nitab4.5_0003080g0060 Nicotiana tabacum HOM05D000803 ORTHO05D001162 3.1e-06 55.8 64 37.5
Sabra02G0053100 Salix brachista HOM05D000803 ORTHO05D007008 3.1e-06 55.8 78 37.2
TPR.G4141 Trifolium pratense HOM05D000803 ORTHO05D009288 3.1e-06 55.8 50 50.0
Carub.0001s3942 Capsella rubella HOM05D000803 ORTHO05D009288 4.1e-06 55.5 69 37.7
DCAR_002593 Daucus carota HOM05D000803 ORTHO05D009288 4.1e-06 55.5 48 47.9
Dinv25794 Davidia involucrata HOM05D000803 ORTHO05D001162 4.1e-06 55.5 115 33.9
Thhalv10005020m.g Eutrema salsugineum HOM05D000803 ORTHO05D007008 4.1e-06 55.5 71 36.6
Gohir.A04G109000 Gossypium hirsutum HOM05D000803 ORTHO05D009288 4.1e-06 55.5 69 40.6
unitig_0.g862 Utricularia gibba HOM05D000803 ORTHO05D001162 4.1e-06 55.5 70 34.3
CARHR035380 Cardamine hirsuta HOM05D000803 ORTHO05D007008 5.3e-06 55.1 142 31.0
ClCG02G005980 Citrullus lanatus HOM05D000803 ORTHO05D001162 5.3e-06 55.1 54 38.9
Duzib132G0129 Durio zibethinus HOM05D000803 ORTHO05D009288 5.3e-06 55.1 88 36.4
Gohir.D04G148500 Gossypium hirsutum HOM05D000803 ORTHO05D009288 5.3e-06 55.1 59 42.4
Gorai.012G134800 Gossypium raimondii HOM05D000803 ORTHO05D009288 5.3e-06 55.1 59 42.4
Manes.02G180500 Manihot esculenta HOM05D000803 ORTHO05D007008 5.3e-06 55.1 58 41.4
Potri.002G066800 Populus trichocarpa HOM05D000803 ORTHO05D007008 5.3e-06 55.1 72 38.9
THA.LOC104809204 Tarenaya hassleriana HOM05D000803 ORTHO05D007008 5.3e-06 55.1 88 33.0
Thecc.02G157100 Theobroma cacao HOM05D000803 ORTHO05D009288 5.3e-06 55.1 90 34.4
CDE06G0325 Ceratophyllum demersum HOM05D000803 ORTHO05D007008 7.0e-06 54.7 95 33.7
AUR62026795 Chenopodium quinoa HOM05D000803 ORTHO05D001162 7.0e-06 54.7 91 34.1
PRCOL_00000229 Prasinoderma coloniale HOM05D000803 ORTHO05D007008 7.0e-06 54.7 70 34.3
TAR381G0004 Trochodendron aralioides HOM05D000803 ORTHO05D007008 7.0e-06 54.7 70 38.6
ATR0618G274 Amborella trichopoda HOM05D000803 ORTHO05D009288 9.1e-06 54.3 59 42.4
arahy.Tifrunner.gnm1.ann1.NS7DLW Arachis hypogaea HOM05D000803 ORTHO05D009288 9.1e-06 54.3 42 52.4
CAN.G282.48 Capsicum annuum HOM05D000803 ORTHO05D009288 9.1e-06 54.3 57 42.1
Mapoly0166s0016 Marchantia polymorpha HOM05D000803 ORTHO05D007008 9.1e-06 54.3 58 41.4
PSO675G7586 Papaver somniferum HOM05D000803 ORTHO05D007008 9.1e-06 54.3 130 30.0
Phvul.009G133900 Phaseolus vulgaris HOM05D000803 ORTHO05D001162 9.1e-06 54.3 116 29.3
SalBow7G1797 Salvia bowleyana HOM05D000803 ORTHO05D007008 9.1e-06 54.3 58 43.1
SalBow7G3643 Salvia bowleyana HOM05D000803 ORTHO05D007008 9.1e-06 54.3 58 43.1
Hund17447 Selenicereus undatus HOM05D000803 ORTHO05D007008 9.1e-06 54.3 58 43.1
TAR633G2798 Trochodendron aralioides HOM05D006056 ORTHO05D007136 9.1e-06 54.3 57 54.4
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 9.1e-06 54.3 69 34.8


User provided reference genes

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