Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 2.4e-69 265.4 135 100.0
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 1.4e-29 133.3 106 69.8
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 3.2e-29 132.1 132 60.6
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 1.7e-27 126.3 142 54.9
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 3.1e-24 115.5 138 51.4
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 1.3e-22 110.2 128 50.8
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.4e-21 105.9 120 51.7
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 3.2e-21 105.5 94 58.5
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 3.2e-21 105.5 94 58.5
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 7.1e-21 104.4 92 57.6
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 9.3e-21 104.0 127 51.2
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 9.3e-21 104.0 98 58.2
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 1.6e-20 103.2 124 51.6
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 3.5e-20 102.1 136 46.3
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 4.6e-20 101.7 136 47.8
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 4.6e-20 101.7 125 49.6
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 1.0e-19 100.5 133 46.6
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 1.8e-19 99.8 135 45.9
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 3.0e-19 99.0 131 47.3
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 3.9e-19 98.6 132 47.7
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 8.7e-19 97.4 141 47.5
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 8.7e-19 97.4 148 44.6
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 1.1e-18 97.1 139 46.0
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 1.1e-18 97.1 113 50.4
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 1.5e-18 96.7 198 36.4
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 5.6e-18 94.7 92 55.4
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 5.6e-18 94.7 92 55.4
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 5.6e-18 94.7 92 55.4
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 7.4e-18 94.4 108 47.2
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 2.1e-17 92.8 131 45.0
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 2.8e-17 92.4 146 43.8
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 3.6e-17 92.0 119 47.9
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 4.8e-17 91.7 148 42.6
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 4.8e-17 91.7 125 48.8
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 8.1e-17 90.9 83 59.0
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 1.4e-16 90.1 138 45.7
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 1.8e-16 89.7 132 42.4
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 1.8e-16 89.7 104 50.0
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 1.8e-16 89.7 90 56.7
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 2.4e-16 89.4 123 45.5
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 3.1e-16 89.0 115 47.0
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 4.0e-16 88.6 110 50.0
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 9.0e-16 87.4 138 44.9
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 1.5e-15 86.7 140 42.9
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 1.5e-15 86.7 138 41.3
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 1.5e-15 86.7 90 50.0
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 2.6e-15 85.9 96 50.0
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 3.4e-15 85.5 132 41.7
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 4.5e-15 85.1 91 50.5
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 5.8e-15 84.7 128 42.2
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 7.6e-15 84.3 117 45.3
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 7.6e-15 84.3 150 44.0
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 9.9e-15 84.0 149 40.3
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 1.3e-14 83.6 101 48.5
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 1.7e-14 83.2 122 45.1
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 2.2e-14 82.8 147 38.8
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 2.2e-14 82.8 132 40.9
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-14 82.4 134 42.5
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 4.9e-14 81.6 145 40.0
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 1.4e-13 80.1 129 42.6
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 1.4e-13 80.1 127 38.6
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.4e-13 80.1 134 41.8
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.4e-13 80.1 134 41.8
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 1.4e-13 80.1 127 38.6
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 1.9e-13 79.7 101 47.5
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 1.9e-13 79.7 116 42.2
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 1.9e-13 79.7 130 41.5
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 2.4e-13 79.3 138 42.8
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 3.2e-13 79.0 110 46.4
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 4.2e-13 78.6 81 53.1
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 4.2e-13 78.6 89 42.7
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 4.2e-13 78.6 170 38.2
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 5.5e-13 78.2 137 40.1
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 7.1e-13 77.8 165 38.2
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 1.2e-12 77.0 95 46.3
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 1.2e-12 77.0 95 46.3
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 1.6e-12 76.6 125 41.6
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 2.7e-12 75.9 130 41.5
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 3.5e-12 75.5 140 39.3
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 3.5e-12 75.5 140 39.3
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 3.5e-12 75.5 131 38.9
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 6.0e-12 74.7 90 46.7
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 6.0e-12 74.7 90 46.7
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 1.3e-11 73.6 97 46.4
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 1.8e-11 73.2 92 44.6
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 5.1e-11 71.6 91 45.1
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 4.3e-10 68.6 145 38.6
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 5.6e-10 68.2 101 43.6
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 9.6e-10 67.4 115 40.9
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 2.8e-09 65.9 86 45.3
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 2.8e-09 65.9 153 35.9
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 3.7e-09 65.5 137 35.8
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 8.2e-09 64.3 127 39.4
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 1.1e-08 63.9 94 44.7
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 5.3e-08 61.6 82 45.1
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 5.3e-08 61.6 72 45.8
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 9.0e-08 60.8 74 40.5
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 2.9e-06 55.8 95 41.1
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 4.9e-06 55.1 111 38.7


User provided reference genes

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