Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 5.2e-226 787.3 382 100.0
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.9e-140 503.1 373 66.2
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 2.6e-137 492.7 377 63.7
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 1.3e-136 490.3 373 62.7
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 1.7e-136 490.0 418 58.1
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 1.1e-135 487.3 380 63.2
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 8.7e-133 477.6 373 62.2
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 5.7e-132 474.9 372 61.3
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 1.6e-131 473.4 372 63.7
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 2.8e-131 472.6 377 61.3
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 6.3e-131 471.5 382 62.0
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 6.3e-131 471.5 378 61.6
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 8.2e-131 471.1 372 61.8
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 8.2e-131 471.1 376 62.5
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 2.4e-130 469.5 380 61.6
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 4.1e-130 468.8 377 61.5
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 5.3e-130 468.4 379 60.7
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 6.9e-130 468.0 375 60.5
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 9.0e-130 467.6 377 61.5
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 9.0e-130 467.6 377 60.7
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 2.0e-129 466.5 377 61.5
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 2.0e-129 466.5 377 61.8
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.9e-128 462.6 374 61.0
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 6.5e-128 461.5 374 60.7
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 1.4e-127 460.3 377 61.0
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 3.2e-127 459.1 375 60.3
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.2e-127 458.8 374 61.0
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.2e-126 457.2 374 61.0
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 2.1e-126 456.4 375 59.2
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 1.4e-125 453.8 371 61.5
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 1.4e-125 453.8 378 60.6
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 2.3e-125 453.0 377 60.5
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 3.0e-125 452.6 382 59.9
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.5e-124 450.3 372 60.8
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 2.5e-124 449.5 381 58.8
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 3.3e-124 449.1 376 60.1
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 9.7e-124 447.6 374 59.6
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 9.7e-124 447.6 381 59.3
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 3.7e-123 445.7 380 59.5
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 1.8e-122 443.4 377 59.2
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 3.1e-122 442.6 376 58.8
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 6.9e-122 441.4 379 57.8
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 9.1e-122 441.0 374 59.4
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 2.0e-121 439.9 382 58.4
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 2.6e-121 439.5 375 59.2
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 2.6e-121 439.5 375 59.2
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 3.4e-121 439.1 381 57.7
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 1.0e-120 437.6 376 58.8
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 1.0e-120 437.6 379 58.8
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 1.7e-120 436.8 373 59.2
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 2.9e-120 436.0 383 58.5
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 8.5e-120 434.5 327 63.9
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 1.1e-119 434.1 376 58.5
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 1.4e-119 433.7 381 57.7
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 1.4e-119 433.7 372 59.1
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 2.5e-119 433.0 379 58.6
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 3.2e-119 432.6 376 58.0
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 5.5e-119 431.8 371 58.8
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 7.9e-118 427.9 347 60.8
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 1.8e-117 426.8 377 57.8
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 8.8e-117 424.5 387 56.6
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.0e-116 423.3 349 60.2
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.6e-116 422.9 443 51.2
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 4.4e-116 422.2 309 66.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.7e-115 420.2 376 58.2
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 4.8e-115 418.7 375 57.9
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 4.8e-115 418.7 363 60.3
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.8e-114 416.8 376 57.4
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 1.2e-113 414.1 373 57.4
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 2.9e-112 409.5 383 57.4
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.5e-111 407.1 371 55.5
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 5.5e-111 405.2 372 55.4
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.0e-109 401.0 373 55.5
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 2.3e-109 399.8 374 52.7
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 3.9e-109 399.1 372 55.4
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 6.7e-109 398.3 395 51.6
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 6.3e-107 391.7 373 53.4
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 5.2e-101 372.1 385 52.5
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 2.6e-100 369.8 376 49.5
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 7.5e-100 368.2 392 51.3
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 2.9e-96 356.3 371 52.0
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 5.0e-96 355.5 378 48.9
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 6.8e-93 345.1 379 49.9
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 7.5e-92 341.7 329 55.3
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 2.2e-91 340.1 311 56.9
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 2.8e-91 339.7 318 56.3
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 1.3e-88 330.9 298 54.0
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 2.9e-88 329.7 284 58.8
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 1.6e-86 323.9 395 47.8
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 2.8e-86 323.2 236 66.1
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.2e-78 297.7 319 50.8
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 2.0e-76 290.4 373 43.4
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 3.7e-75 286.2 378 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 6.6e-72 275.4 312 48.1
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 9.5e-71 271.6 376 41.0
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 5.6e-63 245.7 268 51.1
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 8.9e-61 238.4 179 59.8
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 4.9e-59 232.6 264 49.2
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 6.4e-59 232.3 281 46.6
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 2.8e-54 216.9 142 66.9
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 6.2e-54 215.7 279 45.2
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 9.9e-52 208.4 127 72.4
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 3.2e-50 203.4 258 46.1
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 9.3e-50 201.8 233 47.6
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 5.1e-48 196.1 111 79.3
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 1.1e-47 194.9 272 41.5
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.3e-47 193.4 150 59.3
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 6.4e-43 179.1 222 48.6
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 7.1e-42 175.6 230 47.8
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 9.3e-42 175.3 139 55.4
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 3.5e-41 173.3 112 67.0
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 7.9e-41 172.2 102 71.6
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 2.5e-39 167.2 188 45.2
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 6.9e-37 159.1 96 72.9
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 2.4e-34 150.6 88 76.1
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 1.8e-29 134.4 131 54.2
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 1.7e-27 127.9 111 57.7
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 1.4e-21 108.2 87 52.9
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.2e-20 105.1 69 71.0
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 1.7e-19 101.3 219 32.0
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 4.2e-18 96.7 102 43.1
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 4.2e-18 96.7 102 43.1
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 7.2e-18 95.9 93 51.6
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.3e-14 85.1 91 46.2
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 2.8e-14 84.0 60 55.0
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 2.8e-14 84.0 113 38.1
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 3.7e-14 83.6 49 71.4
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 2.6e-12 77.4 49 61.2
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 2.6e-12 77.4 178 29.8
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 2.6e-12 77.4 178 29.8
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 3.4e-12 77.0 105 36.2
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 1.0e-08 65.5 77 46.8
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 8.8e-08 62.4 245 29.8
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 1.7e-06 58.2 93 36.6
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 6.3e-06 56.2 152 28.3


User provided reference genes

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