Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 5.7e-214 747.3 370 100.0
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 3.9e-186 654.8 370 86.2
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 5.1e-186 654.4 369 86.2
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.5e-185 652.1 369 86.2
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 3.3e-185 651.7 358 88.0
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 4.3e-185 651.4 370 85.9
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 7.3e-185 650.6 370 85.1
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 2.1e-184 649.0 367 85.8
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 2.1e-184 649.0 369 85.4
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 2.8e-184 648.7 370 85.1
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 3.6e-184 648.3 358 87.2
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 6.2e-184 647.5 370 84.9
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 6.2e-184 647.5 369 85.6
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 1.1e-183 646.7 358 87.2
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 1.4e-183 646.4 370 84.6
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 2.3e-183 645.6 357 86.8
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 3.1e-183 645.2 370 84.6
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 4.0e-183 644.8 358 87.4
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 4.0e-183 644.8 370 84.3
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 4.0e-183 644.8 370 84.3
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 4.0e-183 644.8 370 85.1
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 8.9e-183 643.7 358 86.6
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.5e-182 642.9 358 87.2
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.5e-182 642.9 358 87.2
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 1.5e-182 642.9 370 85.7
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 1.5e-182 642.9 369 84.3
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 1.5e-182 642.9 367 85.0
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 2.6e-182 642.1 370 84.6
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 2.6e-182 642.1 363 86.2
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 3.4e-182 641.7 370 84.3
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 4.4e-182 641.3 370 84.3
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 4.4e-182 641.3 357 86.3
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 7.5e-182 640.6 369 83.7
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 7.5e-182 640.6 370 83.5
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 9.9e-182 640.2 369 83.5
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 9.9e-182 640.2 370 83.2
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 9.9e-182 640.2 358 86.6
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 1.3e-181 639.8 370 84.6
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 1.3e-181 639.8 358 87.2
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.3e-181 639.8 358 87.2
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 1.7e-181 639.4 370 84.9
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 2.2e-181 639.0 388 82.2
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 2.2e-181 639.0 388 82.2
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 2.9e-181 638.6 367 84.7
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.9e-181 638.6 369 84.8
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 3.7e-181 638.3 369 82.9
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 8.3e-181 637.1 370 83.8
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 1.9e-180 636.0 386 81.1
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 2.4e-180 635.6 367 83.9
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 2.4e-180 635.6 370 83.0
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 4.1e-180 634.8 355 87.6
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 5.4e-180 634.4 370 83.2
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 5.4e-180 634.4 370 84.1
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 9.2e-180 633.6 369 83.2
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 9.2e-180 633.6 370 83.0
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.6e-179 632.9 370 83.2
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 2.1e-179 632.5 370 83.8
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 2.7e-179 632.1 370 83.0
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 6.0e-179 630.9 358 85.2
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 7.8e-179 630.6 373 82.8
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 7.8e-179 630.6 370 82.2
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 3.0e-178 628.6 379 82.8
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 3.0e-178 628.6 370 82.4
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 3.0e-178 628.6 358 84.9
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 1.5e-177 626.3 371 83.3
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 2.5e-177 625.5 371 83.3
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 5.6e-177 624.4 370 82.7
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 5.6e-177 624.4 370 81.9
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 5.6e-177 624.4 358 84.1
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 7.3e-177 624.0 358 85.2
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 2.8e-176 622.1 358 84.1
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 3.6e-176 621.7 358 84.4
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 3.6e-176 621.7 367 82.0
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 4.7e-176 621.3 358 83.8
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 6.2e-176 620.9 370 81.9
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 6.2e-176 620.9 364 83.0
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 6.2e-176 620.9 358 83.8
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 6.8e-175 617.5 364 82.4
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 2.0e-174 615.9 358 83.8
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 9.9e-174 613.6 358 83.5
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 8.4e-173 610.5 367 79.8
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 1.0e-170 603.6 373 80.4
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 3.3e-169 598.6 362 79.6
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 4.3e-169 598.2 369 80.8
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 1.1e-167 593.6 332 85.8
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.5e-166 589.7 332 85.5
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 3.5e-163 578.6 358 76.5
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 5.1e-162 574.7 370 77.6
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.5e-161 573.2 374 77.8
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 4.5e-158 561.6 377 75.3
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.9e-157 558.1 358 78.5
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 6.4e-157 557.8 365 77.8
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 2.1e-152 542.7 371 70.9
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 5.8e-150 534.6 369 68.6
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 1.1e-148 530.4 371 68.7
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 2.1e-139 499.6 279 86.0
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.3e-136 490.3 372 70.4
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.6e-136 490.0 370 70.0
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 3.7e-136 488.8 367 64.0
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 9.0e-135 484.2 271 86.7
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 1.0e-133 480.7 270 86.3
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 1.9e-132 476.5 271 85.2
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 2.4e-127 459.5 374 62.0
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 6.1e-123 444.9 332 69.3
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 3.3e-121 439.1 239 86.6
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.5e-110 402.5 308 67.2
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 1.1e-108 397.5 228 85.5
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.9e-108 396.7 318 66.7
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 4.2e-108 395.6 223 85.2
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 4.2e-108 395.6 223 85.2
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 4.7e-107 392.1 233 80.7
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 4.1e-103 379.0 387 48.6
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 3.4e-89 332.8 243 70.4
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 2.9e-64 250.0 306 43.1
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 1.1e-60 238.0 313 43.1
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 3.2e-55 219.9 389 37.0
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.3e-48 198.0 376 35.4
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.9e-47 194.1 319 35.1
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 5.4e-47 192.6 117 80.3
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 2.3e-45 187.2 336 35.4
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 5.3e-42 176.0 398 30.7
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 1.4e-39 167.9 102 74.5
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 7.1e-39 165.6 100 78.0
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 1.2e-38 164.9 96 85.4
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 4.3e-20 103.2 51 84.3
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.2e-19 100.9 64 73.4
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 1.5e-17 94.7 53 83.0
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 2.1e-14 84.3 45 95.6
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 1.3e-08 65.1 38 84.2
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 2.9e-08 63.9 42 76.2


User provided reference genes

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