Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0003150 Simmondsia chinensis HOM05D007678 ORTHO05D009658 4.8e-132 474.6 247 100.0
Dinv31528 Davidia involucrata HOM05D007678 ORTHO05D009658 6.8e-70 268.1 224 66.1
QL04p021923 Quercus lobata HOM05D007678 ORTHO05D009658 1.7e-68 263.5 253 61.3
Actinidia01693 Actinidia chinensis HOM05D007678 ORTHO05D009658 6.4e-68 261.5 269 58.4
Atru.chr2.1713_Atru.chr2.1714 Acer truncatum HOM05D007678 ORTHO05D009658 7.0e-67 258.1 226 63.3
MD02G1272300 Malus domestica HOM05D007678 ORTHO05D009658 2.0e-66 256.5 211 66.8
TAR623G0324 Trochodendron aralioides HOM05D007678 ORTHO05D009658 6.0e-66 255.0 227 63.0
Potri.001G033500 Populus trichocarpa HOM05D007678 ORTHO05D009658 7.8e-66 254.6 259 57.1
Prupe.2G048500 Prunus persica HOM05D007678 ORTHO05D009658 7.8e-66 254.6 209 67.5
Nn7g37012 Nelumbo nucifera HOM05D007678 ORTHO05D009658 1.3e-65 253.8 236 60.2
Sed0019894 Sechium edule HOM05D000001 ORTHO05D000003 1.1e-64 250.8 254 56.3
Psat3g196520 Pisum sativum HOM05D007678 ORTHO05D009658 4.3e-64 248.8 232 60.8
Lalb_Chr17g0337231 Lupinus albus HOM05D007678 ORTHO05D009658 1.2e-63 247.3 230 59.6
MELO3C034052.2 Cucumis melo HOM05D007678 ORTHO05D009658 2.8e-63 246.1 254 55.5
Ah.12g064780 Amaranthus hybridus HOM05D007678 ORTHO05D009658 6.2e-63 245.0 226 61.1
Thecc.10G137600 Theobroma cacao HOM05D007678 ORTHO05D009658 8.1e-63 244.6 231 60.2
Glyma.09G240200 Glycine max HOM05D007678 ORTHO05D009658 1.8e-62 243.4 218 61.5
RcHm_v2.0_Chr1g0328821 Rosa chinensis HOM05D007678 ORTHO05D009658 2.3e-62 243.0 240 59.6
Haze_02966 Corylus avellana HOM05D007678 ORTHO05D009658 3.1e-62 242.7 239 59.4
Medtr7g009670 Medicago truncatula HOM05D007678 ORTHO05D009658 4.0e-62 242.3 209 62.7
FvH4_7g04260 Fragaria vesca HOM05D007678 ORTHO05D009658 5.2e-62 241.9 243 58.0
PGSC0003DMG401028118 Solanum tuberosum HOM05D007678 ORTHO05D009658 8.9e-62 241.1 246 56.9
Duzib106G1843 Durio zibethinus HOM05D007678 ORTHO05D009658 1.2e-61 240.7 244 58.2
FAN10G0661 Fragaria x ananassa HOM05D007678 ORTHO05D009658 1.5e-61 240.4 211 63.5
Sopen10g031780 Solanum pennellii HOM05D007678 ORTHO05D009658 1.5e-61 240.4 250 55.6
Lj1g0010481 Lotus japonicus HOM05D007678 ORTHO05D009658 4.4e-61 238.8 214 59.8
Solyc10g081280.2 Solanum lycopersicum HOM05D007678 ORTHO05D009658 4.4e-61 238.8 251 55.4
Hund13420 Selenicereus undatus HOM05D007678 ORTHO05D009658 5.8e-61 238.4 258 56.2
ATR0307G037 Amborella trichopoda HOM05D007678 ORTHO05D009658 7.5e-61 238.0 213 62.0
Gohir.D10G198600 Gossypium hirsutum HOM05D007678 ORTHO05D009658 9.8e-61 237.7 205 62.9
TWI38G1059 Tripterygium wilfordii HOM05D007678 ORTHO05D009658 1.7e-60 236.9 209 61.2
Ca_04109_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 8.3e-60 234.6 209 61.2
Ca_04118_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 8.3e-60 234.6 209 61.2
Gorai.011G222500 Gossypium raimondii HOM05D007678 ORTHO05D009658 8.3e-60 234.6 205 62.0
SalBow6G2419 Salvia bowleyana HOM05D007678 ORTHO05D009658 5.4e-59 231.9 246 53.3
Migut.J01589 Erythranthe guttata HOM05D007678 ORTHO05D009658 1.6e-58 230.3 255 52.9
Oeu044217.3 Olea europaea HOM05D007678 ORTHO05D009658 2.7e-58 229.6 261 51.0
Manes.04G155050 Manihot esculenta HOM05D007678 ORTHO05D009658 3.5e-58 229.2 283 50.2
HanXRQChr12g0376111 Helianthus annuus HOM05D007678 ORTHO05D009658 7.8e-58 228.0 228 58.8
EL10Ac2g02701 Beta vulgaris HOM05D007678 ORTHO05D009658 2.3e-57 226.5 233 59.7
DCAR_001914 Daucus carota HOM05D007678 ORTHO05D009658 4.3e-56 222.2 211 58.8
ECA248G0545 Erigeron canadensis HOM05D007678 ORTHO05D009658 4.3e-56 222.2 210 57.1
Sabra01G0023800 Salix brachista HOM05D007678 ORTHO05D009658 5.6e-56 221.9 259 52.1
Eucgr.G03196 Eucalyptus grandis HOM05D007678 ORTHO05D009658 1.6e-55 220.3 238 55.9
MBI13_g30074_MAGBIO Magnolia biondii HOM05D007678 ORTHO05D009658 2.1e-55 219.9 235 56.6
QL04p022035 Quercus lobata HOM05D007678 ORTHO05D009658 3.6e-55 219.2 190 62.6
Lsat_1_v5_gn_7_114920 Lactuca sativa HOM05D007678 ORTHO05D009658 6.2e-55 218.4 222 57.7
PGR031G1114 Punica granatum HOM05D007678 ORTHO05D009658 1.1e-54 217.6 255 54.9
HPP92_018248 Vanilla planifolia HOM05D007678 ORTHO05D009658 3.1e-54 216.1 232 52.6
Gohir.A10G190900 Gossypium hirsutum HOM05D007678 ORTHO05D009658 5.2e-54 215.3 193 60.1
vmacro20847 Vaccinium macrocarpon HOM05D007678 ORTHO05D009658 5.2e-54 215.3 248 52.0
CAN.G128.118 Capsicum annuum HOM05D001269 ORTHO05D001083 3.4e-53 212.6 191 61.3
Peaxi162Scf00153g00057 Petunia axillaris HOM05D007678 ORTHO05D009658 5.8e-53 211.8 192 60.4
COL.COLO4_04659 Corchorus olitorius HOM05D007678 ORTHO05D009658 1.3e-52 210.7 236 53.4
arahy.Tifrunner.gnm1.ann1.EB95VJ Arachis hypogaea HOM05D007678 ORTHO05D009658 1.1e-51 207.6 242 51.7
CDE09G0612 Ceratophyllum demersum HOM05D007678 ORTHO05D009658 4.1e-51 205.7 174 63.2
Nitab4.5_0008005g0010 Nicotiana tabacum HOM05D007678 ORTHO05D009658 4.6e-50 202.2 181 60.8
FAN06G1516 Fragaria x ananassa HOM05D007678 ORTHO05D009658 7.8e-50 201.4 272 48.9
unitig_37.g12769 Utricularia gibba HOM05D007678 ORTHO05D009658 5.1e-49 198.7 201 55.2
CsaV3_5G029470 Cucumis sativus L. HOM05D007678 ORTHO05D000003 1.5e-48 197.2 210 55.2
Nitab4.5_0000062g0570 Nicotiana tabacum HOM05D007678 ORTHO05D009658 1.5e-48 197.2 187 56.7
AUR62031676 Chenopodium quinoa HOM05D007678 ORTHO05D009658 6.2e-47 191.8 171 62.0
Zm00001eb303400 Zea mays HOM05D007678 ORTHO05D009658 4.0e-46 189.1 210 51.0
CiPaw.14G011000 Carya illinoinensis HOM05D007678 ORTHO05D009658 6.4e-44 181.8 190 55.3
Glyma.18G256300 Glycine max HOM05D007678 ORTHO05D009658 5.4e-43 178.7 214 50.9
Pp3c18_7980 Physcomitrium patens HOM05D007678 ORTHO05D009658 9.3e-43 177.9 212 44.8
Rhsim01G0121700 Rhododendron simsii HOM05D007678 ORTHO05D009658 4.6e-42 175.6 148 63.5
VMungo1383G0210 Vigna mungo HOM05D000430 ORTHO05D009658 6.6e-41 171.8 154 60.4
Mapoly0003s0067 Marchantia polymorpha HOM05D007678 ORTHO05D009658 9.6e-40 167.9 211 43.6
CBR_g30334 Chara braunii HOM05D007678 ORTHO05D009658 1.7e-36 157.1 216 40.7
TPR.G4277 Trifolium pratense HOM05D007678 ORTHO05D009658 1.7e-36 157.1 115 70.4
Cc06_g20600 Coffea canephora HOM05D007678 ORTHO05D009658 1.1e-35 154.5 145 57.9
Phvul.008G043200 Phaseolus vulgaris HOM05D007678 ORTHO05D009658 1.3e-33 147.5 142 60.6
arahy.Tifrunner.gnm1.ann1.L3S1G4 Arachis hypogaea HOM05D007678 ORTHO05D009658 6.6e-33 145.2 213 43.7
SMO174G0167 Selaginella moellendorffii HOM05D007678 ORTHO05D009658 7.3e-32 141.7 193 42.0
QL04p021970 Quercus lobata HOM05D007678 ORTHO05D009658 6.2e-31 138.7 95 73.7
Lsat_1_v5_gn_5_155661 Lactuca sativa HOM05D007678 ORTHO05D009658 1.9e-27 127.1 208 41.8
CANSAT56G0191 Cannabis sativa HOM05D007678 ORTHO05D009658 3.2e-27 126.3 129 54.3
Cpa.g.sc33.162 Carica papaya HOM05D007678 ORTHO05D009658 2.1e-23 113.6 98 63.3
Cc06_g20610 Coffea canephora HOM05D007678 ORTHO05D009658 2.6e-21 106.7 86 64.0
arahy.Tifrunner.gnm1.ann1.1DGF2A Arachis hypogaea HOM05D007678 ORTHO05D009658 3.4e-21 106.3 94 58.5
TPR.G8973 Trifolium pratense HOM05D007678 ORTHO05D009658 4.9e-20 102.4 83 60.2
GSVIVG01012452001 Vitis vinifera HOM05D007678 ORTHO05D009658 3.5e-18 96.3 79 64.6
arahy.Tifrunner.gnm1.ann1.6E2HM0 Arachis hypogaea HOM05D007678 ORTHO05D009658 1.1e-16 91.3 73 61.6
PRCOL_00006709 Prasinoderma coloniale HOM05D007678 ORTHO05D009658 1.8e-14 84.0 193 28.0
MCO01G505 Micromonas commoda HOM05D007678 ORTHO05D009658 4.1e-14 82.8 185 28.1
CSS0047660 Camellia sinensis var. sinensis HOM05D007678 ORTHO05D009658 1.2e-13 81.3 51 72.5
QL02p047964 Quercus lobata HOM05D007678 ORTHO05D009658 1.2e-10 71.2 99 49.5
QL04p021975 Quercus lobata HOM05D007678 ORTHO05D009658 2.7e-10 70.1 64 56.2
arahy.Tifrunner.gnm1.ann1.78M82M Arachis hypogaea HOM05D007678 ORTHO05D009658 1.3e-09 67.8 58 58.6
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.5e-08 64.3 54 57.4
FAN03G1326 Fragaria x ananassa HOM05D001392 ORTHO05D006407 4.3e-08 62.8 74 55.4
arahy.Tifrunner.gnm1.ann1.NH3ZAS Arachis hypogaea HOM05D007678 ORTHO05D009658 1.3e-07 61.2 74 48.6
Os07g0222900 Oryza sativa ssp. japonica HOM05D007678 ORTHO05D009658 3.7e-07 59.7 65 47.7
arahy.Tifrunner.gnm1.ann1.MMNX5U Arachis hypogaea HOM05D000747 ORTHO05D009658 1.1e-06 58.2 50 66.0
arahy.Tifrunner.gnm1.ann1.BX3238 Arachis hypogaea HOM05D007678 ORTHO05D009658 4.1e-06 56.2 74 47.3


User provided reference genes

Program Settings