Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0003070 Simmondsia chinensis HOM05D005345 ORTHO05D004682 0.0e+00 1434.5 728 100.0
Hund15794 Selenicereus undatus HOM05D005345 ORTHO05D004682 1.3e-65 255.4 645 33.0
AUR62030590 Chenopodium quinoa HOM05D005345 ORTHO05D004682 3.8e-60 237.3 743 30.8
EL10Ac5g10466 Beta vulgaris HOM05D005345 ORTHO05D004682 1.1e-59 235.7 658 33.6
AUR62024949 Chenopodium quinoa HOM05D005345 ORTHO05D004682 1.2e-58 232.3 751 30.1
Ah.11g042470 Amaranthus hybridus HOM05D005345 ORTHO05D004682 2.1e-58 231.5 733 31.5
Hund13436 Selenicereus undatus HOM05D005345 ORTHO05D004682 2.4e-54 218.0 754 29.4
QL08p065100 Quercus lobata HOM05D005345 ORTHO05D004682 1.4e-43 182.2 515 30.7
Dinv21859 Davidia involucrata HOM05D005345 ORTHO05D004682 7.4e-40 169.9 643 29.1
Duzib128G0800 Durio zibethinus HOM05D005345 ORTHO05D004682 1.3e-36 159.1 616 29.2
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 1.1e-35 156.0 616 28.2
Thecc.10G185200 Theobroma cacao HOM05D005345 ORTHO05D004682 1.4e-35 155.6 584 28.3
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 1.8e-33 148.7 577 27.9
MD01G1169800 Malus domestica HOM05D005345 ORTHO05D004682 1.8e-33 148.7 498 30.1
MD07G1235500 Malus domestica HOM05D005345 ORTHO05D004682 8.8e-33 146.4 429 29.4
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 1.5e-32 145.6 549 28.6
GSVIVG01032655001 Vitis vinifera HOM05D005345 ORTHO05D004682 7.4e-32 143.3 406 31.5
Manes.07G142000 Manihot esculenta HOM05D005345 ORTHO05D004682 3.7e-31 141.0 420 30.5
FAN01G1672 Fragaria x ananassa HOM05D005345 ORTHO05D004682 2.4e-30 138.3 432 27.5
Medtr5g068060 Medicago truncatula HOM05D005345 ORTHO05D004682 9.1e-30 136.3 537 27.0
CiPaw.01G307600 Carya illinoinensis HOM05D005345 ORTHO05D004682 1.6e-29 135.6 587 27.9
FvH4_7g26160 Fragaria vesca HOM05D005345 ORTHO05D004682 2.0e-29 135.2 473 28.5
FAN06G3940 Fragaria x ananassa HOM05D005345 ORTHO05D004682 2.6e-29 134.8 482 28.6
Prupe.2G265800 Prunus persica HOM05D005345 ORTHO05D004682 2.6e-29 134.8 667 27.7
Glyma.14G186800 Glycine max HOM05D005345 ORTHO05D004682 2.9e-28 131.3 422 30.3
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 3.8e-28 131.0 667 27.0
Duzib106G0455 Durio zibethinus HOM05D005345 ORTHO05D004682 2.5e-27 128.3 566 27.7
FAN10G1366 Fragaria x ananassa HOM05D005345 ORTHO05D004682 3.2e-27 127.9 491 25.9
Gohir.A10G177500 Gossypium hirsutum HOM05D005345 ORTHO05D004682 3.2e-27 127.9 533 28.3
Gorai.011G206300 Gossypium raimondii HOM05D005345 ORTHO05D004682 3.2e-27 127.9 528 27.5
Glyma.02G219400 Glycine max HOM05D005345 ORTHO05D004682 4.2e-27 127.5 496 28.6
Lj8C52G7 Lonicera japonica HOM05D005345 ORTHO05D004682 4.2e-27 127.5 400 29.5
Nitab4.5_0005979g0010 Nicotiana tabacum HOM05D005345 ORTHO05D004682 4.2e-27 127.5 434 26.5
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 5.5e-27 127.1 547 27.1
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 7.2e-27 126.7 456 28.7
Eucgr.J00102 Eucalyptus grandis HOM05D005345 ORTHO05D004682 7.2e-27 126.7 432 31.5
Manes.10G003400 Manihot esculenta HOM05D005345 ORTHO05D004682 2.1e-26 125.2 687 27.1
RcHm_v2.0_Chr1g0372591 Rosa chinensis HOM05D005345 ORTHO05D004682 2.7e-26 124.8 523 27.3
PGSC0003DMG400022956 Solanum tuberosum HOM05D005345 ORTHO05D004682 6.1e-26 123.6 225 35.1
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 1.8e-25 122.1 541 25.7
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 1.8e-25 122.1 541 25.7
Nitab4.5_0000171g0310 Nicotiana tabacum HOM05D005345 ORTHO05D004682 5.2e-25 120.6 440 26.8
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 5.2e-25 120.6 448 27.5
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 1.2e-24 119.4 679 26.7
Phvul.008G186500 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 1.2e-24 119.4 502 28.9
CAN.G1229.5 Capsicum annuum HOM05D005345 ORTHO05D004682 2.0e-24 118.6 455 27.3
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 2.6e-24 118.2 484 27.7
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 3.3e-24 117.9 431 28.5
DCAR_009470 Daucus carota HOM05D005345 ORTHO05D004682 5.7e-24 117.1 301 29.6
Gohir.D04G011300 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.3e-23 115.9 405 30.4
TAR636G0005 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.7e-23 115.5 245 33.9
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 2.8e-23 114.8 636 24.7
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 3.7e-23 114.4 526 26.8
TAR633G2169 Trochodendron aralioides HOM05D005345 ORTHO05D004682 3.7e-23 114.4 601 25.8
TWI53G1830 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 6.3e-23 113.6 580 27.1
Gohir.A05G404400 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.1e-22 112.8 491 29.9
Sopen03g025560 Solanum pennellii HOM05D005345 ORTHO05D004682 1.4e-22 112.5 455 26.4
CANSAT56G0683 Cannabis sativa HOM05D005345 ORTHO05D004682 2.4e-22 111.7 546 27.3
TWI09G1031 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 4.1e-22 110.9 531 29.4
Ca_16857_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 2.0e-21 108.6 462 27.5
Ca_29505_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 2.0e-21 108.6 462 27.5
Nn5g26827 Nelumbo nucifera HOM05D005345 ORTHO05D004682 2.7e-21 108.2 649 24.8
Carub.0006s0412 Capsella rubella HOM05D010812 ORTHO05D004682 3.5e-21 107.8 281 31.0
arahy.Tifrunner.gnm1.ann1.A39QJ2 Arachis hypogaea HOM05D005345 ORTHO05D004682 4.5e-21 107.5 444 27.7
Oeu006068.1 Olea europaea HOM05D005345 ORTHO05D004682 5.9e-21 107.1 412 29.1
A03p02230 Brassica napus HOM05D010812 ORTHO05D004682 7.7e-21 106.7 348 29.9
BraA03t09587Z Brassica rapa HOM05D010812 ORTHO05D004682 7.7e-21 106.7 348 29.9
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 1.7e-20 105.5 340 27.9
Peaxi162Scf00073g00227 Petunia axillaris HOM05D005345 ORTHO05D004682 6.5e-20 103.6 527 25.6
TAR369G0882 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.5e-19 102.4 729 23.7
Lalb_Chr08g0239261 Lupinus albus HOM05D005345 ORTHO05D004682 1.9e-19 102.1 380 26.1
Lj1g0012895 Lotus japonicus HOM05D005345 ORTHO05D004682 2.5e-19 101.7 493 26.4
BcaB01g05942 Brassica carinata HOM05D010812 ORTHO05D004682 3.2e-19 101.3 509 26.9
BolC3t12809H Brassica oleracea HOM05D010812 ORTHO05D004682 3.2e-19 101.3 509 26.9
Rhsim03G0153800 Rhododendron simsii HOM05D005345 ORTHO05D004682 4.2e-19 100.9 653 25.4
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 5.5e-19 100.5 458 26.4
C03p02570 Brassica napus HOM05D010812 ORTHO05D004682 7.2e-19 100.1 509 26.9
Gorai.012G013500 Gossypium raimondii HOM05D005345 ORTHO05D004682 7.2e-19 100.1 500 27.4
AL6G15030 Arabidopsis lyrata HOM05D010812 ORTHO05D004682 1.2e-18 99.4 266 30.5
Medtr3g093780 Medicago truncatula HOM05D005345 ORTHO05D004682 1.2e-18 99.4 428 27.3
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 1.2e-18 99.4 182 33.5
TAR623G1626 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.2e-18 99.4 495 26.9
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 2.1e-18 98.6 557 25.9
BcaC06g32228 Brassica carinata HOM05D010812 ORTHO05D004682 2.7e-18 98.2 384 28.4
VMungo1309G1748 Vigna mungo HOM05D005345 ORTHO05D004682 3.6e-18 97.8 722 24.8
CARHR208070 Cardamine hirsuta HOM05D010812 ORTHO05D004682 4.7e-18 97.4 383 27.4
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 4.7e-18 97.4 658 24.8
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 1.0e-17 96.3 481 24.9
Oeu064002.1 Olea europaea HOM05D005345 ORTHO05D004682 1.0e-17 96.3 529 24.8
Aqoxy4G03281 Aquilegia oxysepala HOM05D005345 ORTHO05D004682 1.4e-17 95.9 440 26.6
AT5G05190 Arabidopsis thaliana HOM05D010812 ORTHO05D004682 1.4e-17 95.9 212 32.1
THA.LOC104826873 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 1.8e-17 95.5 384 25.3
Phvul.009G042600 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 3.0e-17 94.7 693 25.5
Sp6g37640 Schrenkiella parvula HOM05D010812 ORTHO05D004682 3.0e-17 94.7 187 33.2
Cc02_g05190 Coffea canephora HOM05D005345 ORTHO05D004682 4.0e-17 94.4 673 23.8
Migut.F00566 Erythranthe guttata HOM05D005345 ORTHO05D004682 4.0e-17 94.4 133 42.1
Solyc03g095610.4 Solanum lycopersicum HOM05D005345 ORTHO05D004682 6.8e-17 93.6 692 23.6
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 8.8e-17 93.2 648 25.0
MBI03_g40812_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 1.5e-16 92.4 174 35.1
TPR.G13957 Trifolium pratense HOM05D005345 ORTHO05D004682 2.0e-16 92.0 398 27.1
A10p31000 Brassica napus HOM05D010812 ORTHO05D004682 4.4e-16 90.9 402 27.4
Atru.chr12.192 Acer truncatum HOM05D005345 ORTHO05D004682 5.7e-16 90.5 505 25.7
arahy.Tifrunner.gnm1.ann1.0QV8DZ Arachis hypogaea HOM05D005345 ORTHO05D004682 5.7e-16 90.5 666 24.3
Eucgr.G03149 Eucalyptus grandis HOM05D005345 ORTHO05D004682 9.8e-16 89.7 189 32.8
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 1.3e-15 89.4 620 25.2
Actinidia13637 Actinidia chinensis HOM05D005345 ORTHO05D004682 1.7e-15 89.0 779 25.0
DCAR_018044 Daucus carota HOM05D005345 ORTHO05D004682 2.2e-15 88.6 379 26.1
MSTRG.27252 Avicennia marina HOM05D005345 ORTHO05D004682 2.8e-15 88.2 83 49.4
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 3.7e-15 87.8 602 24.4
Oeu039387.1 Olea europaea HOM05D005345 ORTHO05D004682 4.8e-15 87.4 670 24.6
SGA_v2.0_scaffold60G20878 Striga asiatica HOM05D005345 ORTHO05D004682 4.8e-15 87.4 123 43.9
ClCG11G005600 Citrullus lanatus HOM05D005345 ORTHO05D004682 6.3e-15 87.0 631 25.0
Actinidia07784 Actinidia chinensis HOM05D005345 ORTHO05D004682 8.3e-15 86.7 709 25.4
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 1.1e-14 86.3 414 25.4
MELO3C020021.2 Cucumis melo HOM05D005345 ORTHO05D004682 1.1e-14 86.3 631 23.9
DCAR_020155 Daucus carota HOM05D005345 ORTHO05D004682 1.1e-14 86.3 745 24.6
BraA10t45145Z Brassica rapa HOM05D010812 ORTHO05D004682 7.0e-14 83.6 520 25.6
THA.LOC104816507 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 1.2e-13 82.8 480 22.9
PGR142G1797 Punica granatum HOM05D005345 ORTHO05D004682 1.6e-13 82.4 134 40.3
PGR044G0353 Punica granatum HOM05D005345 ORTHO05D004682 3.5e-13 81.3 544 23.3
Thhalv10013098m.g Eutrema salsugineum HOM05D010812 ORTHO05D004682 4.5e-13 80.9 527 23.5
C09p71510 Brassica napus HOM05D010812 ORTHO05D004682 1.7e-12 79.0 494 25.7
ATR1127G123 Amborella trichopoda HOM05D002045 ORTHO05D002014 5.0e-12 77.4 155 36.1
MSTRG.8382 Avicennia marina HOM05D005345 ORTHO05D004682 5.0e-12 77.4 144 37.5
Lalb_Chr11g0067691 Lupinus albus HOM05D005345 ORTHO05D004682 8.6e-12 76.6 378 25.7
PSO017G7165 Papaver somniferum HOM05D005345 ORTHO05D004682 8.6e-12 76.6 434 24.0
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 1.5e-11 75.9 516 25.2
ECA238G0953 Erigeron canadensis HOM05D005345 ORTHO05D004682 4.2e-11 74.3 213 27.7
BcaB01g05719 Brassica carinata HOM05D010812 ORTHO05D004682 5.5e-11 73.9 482 25.3
THA.LOC104824598 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 1.6e-10 72.4 301 28.9
Gorai.013G008500 Gossypium raimondii HOM05D005345 ORTHO05D004682 2.1e-10 72.0 609 25.3
HanXRQChr14g0460501 Helianthus annuus HOM05D005345 ORTHO05D004682 2.1e-10 72.0 209 29.7
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 2.1e-10 72.0 679 22.5
THA.LOC104814291 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 2.1e-10 72.0 159 32.7
vmacro06904 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 2.8e-10 71.6 722 23.8
Nn2g10264 Nelumbo nucifera HOM05D005345 ORTHO05D004682 8.0e-10 70.1 539 23.9
HanXRQChr07g0204951 Helianthus annuus HOM05D005345 ORTHO05D004682 1.4e-09 69.3 77 41.6
Gohir.D13G008100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 2.3e-09 68.6 612 25.5
Lj1A968T60 Lonicera japonica HOM05D005345 ORTHO05D004682 2.3e-09 68.6 673 24.4
SGA_v2.0_scaffold44G16618 Striga asiatica HOM05D005345 ORTHO05D004682 1.2e-08 66.2 132 37.1
HPP92_000615 Vanilla planifolia HOM05D002045 ORTHO05D002014 3.4e-08 64.7 99 35.4
CARHR166540 Cardamine hirsuta HOM05D010499 ORTHO05D013671 4.4e-08 64.3 131 35.1
Gohir.A13G007900 Gossypium hirsutum HOM05D005345 ORTHO05D004682 4.4e-08 64.3 605 25.0
Lsat_1_v5_gn_2_126680 Lactuca sativa HOM05D005345 ORTHO05D004682 5.7e-08 63.9 151 29.1
Thecc.01G346100 Theobroma cacao HOM05D002045 ORTHO05D002014 7.5e-08 63.5 126 34.1
unitig_88.g27732 Utricularia gibba HOM05D002045 ORTHO05D002014 7.5e-08 63.5 215 25.1
TAR629G3516 Trochodendron aralioides HOM05D002045 ORTHO05D002014 9.8e-08 63.2 130 32.3
Actinidia31637 Actinidia chinensis HOM05D005345 ORTHO05D004682 1.7e-07 62.4 761 24.3
AUR62010811 Chenopodium quinoa HOM05D002045 ORTHO05D002014 1.7e-07 62.4 125 32.8
MBI07_g24336_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 1.7e-07 62.4 131 32.1
Nn3g19072 Nelumbo nucifera HOM05D002045 ORTHO05D002014 2.2e-07 62.0 84 41.7
unitig_46.g18752 Utricularia gibba HOM05D005345 ORTHO05D004682 2.2e-07 62.0 94 37.2
CSS0034118 Camellia sinensis var. sinensis HOM05D002045 ORTHO05D002014 2.8e-07 61.6 78 41.0
Oeu007859.2 Olea europaea HOM05D002045 ORTHO05D002014 2.8e-07 61.6 104 36.5
AT3G56410 Arabidopsis thaliana HOM05D010499 ORTHO05D013671 3.7e-07 61.2 83 39.8
Manes.05G025300 Manihot esculenta HOM05D002045 ORTHO05D002014 3.7e-07 61.2 125 30.4
Dinv43899 Davidia involucrata HOM05D002045 ORTHO05D002014 4.9e-07 60.8 85 38.8
Gorai.007G106800 Gossypium raimondii HOM05D002045 ORTHO05D002014 4.9e-07 60.8 49 53.1
SalBow3G3781 Salvia bowleyana HOM05D005345 ORTHO05D004682 6.3e-07 60.5 427 25.5
AUR62019810 Chenopodium quinoa HOM05D002045 ORTHO05D002014 8.3e-07 60.1 125 32.0
TAR374G0195 Trochodendron aralioides HOM05D002045 ORTHO05D002014 8.3e-07 60.1 63 46.0
HPP92_022866 Vanilla planifolia HOM05D005345 ORTHO05D004682 8.3e-07 60.1 67 46.3
QL04p056206 Quercus lobata HOM05D002045 ORTHO05D002014 1.1e-06 59.7 53 49.1
Rhsim01G0170600 Rhododendron simsii HOM05D002045 ORTHO05D002014 1.1e-06 59.7 60 45.0
Duzib133G0749 Durio zibethinus HOM05D002045 ORTHO05D002014 1.4e-06 59.3 66 45.5
Thhalv10005743m.g Eutrema salsugineum HOM05D010499 ORTHO05D013671 1.4e-06 59.3 211 30.3
AL5G37740 Arabidopsis lyrata HOM05D010499 ORTHO05D013671 2.4e-06 58.5 83 38.6
PSO170G1015 Papaver somniferum HOM05D005345 ORTHO05D004682 2.4e-06 58.5 555 22.0
CDE04G0305 Ceratophyllum demersum HOM05D025459 ORTHO05D004682 3.1e-06 58.2 239 23.0
Aa31LG10G11300 Aethionema arabicum HOM05D010499 ORTHO05D013671 4.1e-06 57.8 185 29.7
Aqoxy7G00147 Aquilegia oxysepala HOM05D002045 ORTHO05D002014 4.1e-06 57.8 67 43.3
CARHR249200 Cardamine hirsuta HOM05D002045 ORTHO05D002014 4.1e-06 57.8 54 44.4
Potri.014G095700 Populus trichocarpa HOM05D002045 ORTHO05D002014 4.1e-06 57.8 119 32.8
MSTRG.17325 Avicennia marina HOM05D002045 ORTHO05D002014 9.2e-06 56.6 234 27.4
Cfa003827 Carpinus fangiana HOM05D002045 ORTHO05D002014 9.2e-06 56.6 56 44.6
Haze_15628 Corylus avellana HOM05D002045 ORTHO05D002014 9.2e-06 56.6 56 44.6


User provided reference genes

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