Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 3.5e-66 255.0 131 100.0
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 9.3e-43 177.2 124 70.2
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 7.8e-42 174.1 124 69.4
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 1.3e-41 173.3 124 70.2
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 1.1e-40 170.2 124 68.5
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.5e-40 169.9 123 65.9
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.3e-40 168.3 124 67.7
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 5.6e-40 167.9 123 65.0
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 1.3e-39 166.8 118 70.3
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 2.1e-39 166.0 121 69.4
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 2.1e-39 166.0 124 69.4
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 4.8e-39 164.9 128 64.8
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 6.2e-39 164.5 124 66.9
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 6.2e-39 164.5 124 66.1
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.8e-38 162.9 125 64.8
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 4.0e-38 161.8 124 64.5
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 6.9e-38 161.0 124 62.9
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 9.0e-38 160.6 124 64.5
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 9.0e-38 160.6 129 65.9
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 4.5e-37 158.3 135 61.5
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 5.8e-37 157.9 121 65.3
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 9.9e-37 157.1 124 62.1
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.3e-36 156.8 124 63.7
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.7e-36 156.4 124 60.5
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 1.7e-36 156.4 124 62.1
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 2.2e-36 156.0 124 66.9
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 3.8e-36 155.2 125 64.0
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 8.4e-36 154.1 112 67.9
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.1e-35 153.7 121 66.1
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.4e-35 153.3 128 62.5
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.4e-35 153.3 122 64.8
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 4.2e-35 151.8 121 63.6
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 5.4e-35 151.4 127 59.8
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 5.4e-35 151.4 119 67.2
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 7.1e-35 151.0 131 59.5
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.2e-34 150.2 128 61.7
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 4.6e-34 148.3 125 63.2
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 6.0e-34 147.9 125 60.8
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.3e-33 146.7 128 60.2
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.8e-33 146.4 120 62.5
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 2.3e-33 146.0 130 56.9
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 3.9e-33 145.2 124 58.1
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 5.1e-33 144.8 128 59.4
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.7e-33 144.1 124 56.5
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.7e-33 144.1 124 56.5
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 8.7e-33 144.1 130 56.2
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 8.7e-33 144.1 126 58.7
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 4.3e-32 141.7 110 67.3
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 4.3e-32 141.7 147 54.4
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.3e-32 141.7 128 59.4
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 7.4e-32 141.0 124 59.7
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 9.6e-32 140.6 123 59.3
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.3e-31 140.2 103 68.0
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 1.3e-31 140.2 109 62.4
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.6e-31 139.8 122 59.0
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 3.7e-31 138.7 105 65.7
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 3.7e-31 138.7 120 60.0
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.8e-31 138.3 121 57.0
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 6.2e-31 137.9 104 65.4
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 6.2e-31 137.9 103 68.0
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 6.2e-31 137.9 111 65.8
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 6.2e-31 137.9 111 64.0
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 6.2e-31 137.9 111 64.0
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 8.1e-31 137.5 120 57.5
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 8.1e-31 137.5 127 58.3
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.1e-30 137.1 127 56.7
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.1e-30 137.1 102 66.7
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.1e-30 137.1 111 64.0
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.4e-30 136.7 105 61.0
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.1e-30 135.6 124 54.8
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 4.0e-30 135.2 129 58.1
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 4.0e-30 135.2 127 56.7
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 5.3e-30 134.8 132 56.8
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 6.9e-30 134.4 124 54.8
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 9.0e-30 134.0 124 52.4
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 9.0e-30 134.0 124 52.4
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 9.0e-30 134.0 105 61.9
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.5e-29 133.3 129 55.8
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.0e-29 132.9 121 57.9
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 2.0e-29 132.9 124 51.6
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 2.0e-29 132.9 105 62.9
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 3.4e-29 132.1 121 53.7
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.4e-29 132.1 104 63.5
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 4.5e-29 131.7 102 63.7
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 4.5e-29 131.7 102 65.7
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 4.5e-29 131.7 115 60.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 7.6e-29 131.0 122 56.6
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.7e-28 129.8 103 67.0
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 2.2e-28 129.4 102 62.7
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 2.9e-28 129.0 99 65.7
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 3.8e-28 128.6 129 52.7
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 4.9e-28 128.3 96 66.7
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 8.4e-28 127.5 102 62.7
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.1e-27 127.1 122 57.4
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.4e-27 126.7 103 65.0
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 2.4e-27 125.9 128 52.3
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 2.4e-27 125.9 104 57.7
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.2e-27 125.6 109 57.8
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 4.2e-27 125.2 125 53.6
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 4.2e-27 125.2 109 59.6
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 5.5e-27 124.8 121 53.7
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 7.1e-27 124.4 103 63.1
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.6e-26 123.2 103 62.1
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.3e-25 120.2 74 78.4
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 2.3e-25 119.4 126 50.0
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 2.3e-25 119.4 118 56.8
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 5.1e-25 118.2 120 54.2
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 5.1e-25 118.2 70 77.1
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 6.7e-25 117.9 102 60.8
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 8.7e-25 117.5 103 57.3
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 1.9e-24 116.3 112 56.2
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 9.6e-24 114.0 102 64.7
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.1e-23 112.8 195 39.0
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 6.2e-23 111.3 68 77.9
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 6.2e-23 111.3 70 72.9
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 8.2e-23 110.9 103 60.2
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.1e-22 110.5 99 57.6
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 2.0e-21 106.3 128 48.4
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 2.0e-21 106.3 65 80.0
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 3.4e-21 105.5 109 53.2
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 1.3e-20 103.6 124 47.6
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 2.2e-20 102.8 100 59.0
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.1e-19 100.5 56 82.1
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.4e-19 100.1 105 54.3
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 1.4e-19 100.1 125 47.2
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 7.4e-16 87.8 142 40.8
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 2.8e-15 85.9 52 73.1
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 3.1e-14 82.4 51 70.6
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 6.9e-14 81.3 47 80.9
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 7.7e-13 77.8 96 46.9
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 7.7e-13 77.8 96 46.9
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 3.8e-12 75.5 90 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 2.5e-11 72.8 118 38.1
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 8.8e-09 64.3 40 77.5
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 9.7e-08 60.8 126 36.5
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.2e-07 59.7 124 32.3
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 2.8e-07 59.3 82 37.8
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 1.1e-06 57.4 47 53.2


User provided reference genes

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