Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0002440 Simmondsia chinensis HOM05D007537 ORTHO05D009602 3.1e-207 724.9 373 100.0
Rhsim09G0177700 Rhododendron simsii HOM05D007537 ORTHO05D009602 2.4e-63 246.9 393 43.8
Peaxi162Scf00284g01051 Petunia axillaris HOM05D007537 ORTHO05D009602 6.0e-62 242.3 398 43.2
Actinidia13942 Actinidia chinensis HOM05D007537 ORTHO05D009602 1.6e-59 234.2 392 41.6
vmacro10037 Vaccinium macrocarpon HOM05D007537 ORTHO05D009602 3.7e-59 233.0 388 41.5
Manes.07G130900 Manihot esculenta HOM05D007537 ORTHO05D009602 6.5e-56 222.2 374 41.4
CSS0047961 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.1e-55 221.5 395 41.5
AUR62022900 Chenopodium quinoa HOM05D007537 ORTHO05D009602 1.1e-55 221.5 392 42.3
Sopen06g017350 Solanum pennellii HOM05D007537 ORTHO05D009602 1.1e-55 221.5 390 42.3
CSS0001440 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 5.5e-55 219.2 393 40.2
Cc02_g06360 Coffea canephora HOM05D007537 ORTHO05D009602 7.1e-55 218.8 399 41.9
TAR633G2636 Trochodendron aralioides HOM05D007537 ORTHO05D009602 7.1e-55 218.8 370 40.3
Solyc06g051360.3 Solanum lycopersicum HOM05D007537 ORTHO05D009602 2.1e-54 217.2 389 41.4
Duzib114G0965 Durio zibethinus HOM05D007537 ORTHO05D009602 3.5e-54 216.5 375 40.8
Hund13875 Selenicereus undatus HOM05D007537 ORTHO05D009602 6.7e-53 212.2 412 41.0
AUR62012265 Chenopodium quinoa HOM05D007537 ORTHO05D009602 1.9e-52 210.7 442 40.5
CSS0034530 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 3.3e-52 209.9 380 39.2
Nitab4.5_0000797g0160 Nicotiana tabacum HOM05D007537 ORTHO05D009602 4.3e-52 209.5 398 39.7
Nitab4.5_0008231g0020 Nicotiana tabacum HOM05D007537 ORTHO05D009602 4.3e-52 209.5 394 39.1
PGSC0003DMG400024236 Solanum tuberosum HOM05D007537 ORTHO05D009602 4.8e-51 206.1 393 41.7
Thecc.10G014900 Theobroma cacao HOM05D007537 ORTHO05D009602 4.8e-51 206.1 377 40.3
DCAR_011821 Daucus carota HOM05D007537 ORTHO05D009602 6.3e-51 205.7 356 43.0
Potri.008G069800 Populus trichocarpa HOM05D007537 ORTHO05D009602 8.2e-51 205.3 373 40.8
Prupe.2G251400 Prunus persica HOM05D007537 ORTHO05D009602 1.1e-50 204.9 383 41.5
Sabra08G0051400 Salix brachista HOM05D007537 ORTHO05D009602 1.1e-50 204.9 378 40.5
RcHm_v2.0_Chr1g0370441 Rosa chinensis HOM05D007537 ORTHO05D009602 2.4e-50 203.8 400 41.2
Aqoxy2G00863 Aquilegia oxysepala HOM05D007537 ORTHO05D009602 3.1e-50 203.4 382 40.6
COL.COLO4_25746 Corchorus olitorius HOM05D007537 ORTHO05D009602 9.0e-50 201.8 393 38.9
MBI03_g40958_MAGBIO Magnolia biondii HOM05D007537 ORTHO05D009602 1.2e-49 201.4 377 44.6
Cfa001307 Carpinus fangiana HOM05D007537 ORTHO05D009602 7.7e-49 198.7 375 40.0
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 1.7e-48 197.6 407 39.3
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 3.8e-48 196.4 408 39.0
LjContig00357g0012610 Lotus japonicus HOM05D007537 ORTHO05D009602 5.0e-48 196.1 357 40.3
FAN06G1236 Fragaria x ananassa HOM05D007537 ORTHO05D009602 1.1e-47 194.9 406 39.7
Sed0013636 Sechium edule HOM05D007537 ORTHO05D009602 1.4e-47 194.5 376 37.8
FAN03G1922 Fragaria x ananassa HOM05D007537 ORTHO05D009602 2.5e-47 193.7 401 40.1
HanXRQChr08g0221761 Helianthus annuus HOM05D007537 ORTHO05D009602 5.5e-47 192.6 328 41.2
Medtr5g082850 Medicago truncatula HOM05D007537 ORTHO05D009602 5.5e-47 192.6 359 39.3
PGR044G1397 Punica granatum HOM05D007537 ORTHO05D009602 5.5e-47 192.6 390 39.2
THA.LOC104823184 Tarenaya hassleriana HOM05D007537 ORTHO05D009602 5.5e-47 192.6 355 43.1
Ciclev10031789m.g Citrus clementina HOM05D007537 ORTHO05D009602 7.2e-47 192.2 355 38.6
FAN10G0956 Fragaria x ananassa HOM05D007537 ORTHO05D009602 9.4e-47 191.8 408 39.0
Glyma.02G257900 Glycine max HOM05D007537 ORTHO05D009602 9.4e-47 191.8 356 40.4
CiPaw.01G299800 Carya illinoinensis HOM05D007537 ORTHO05D009602 1.6e-46 191.0 369 39.3
FAN01G2979 Fragaria x ananassa HOM05D007537 ORTHO05D009602 7.9e-46 188.7 410 39.8
FvH4_7g24610 Fragaria vesca HOM05D007537 ORTHO05D009602 2.3e-45 187.2 401 38.4
VMungo0647G0018 Vigna mungo HOM05D007537 ORTHO05D009602 3.9e-45 186.4 358 39.4
ClCG07G004310 Citrullus lanatus HOM05D007537 ORTHO05D009602 1.1e-44 184.9 381 37.8
Psat2g031640 Pisum sativum HOM05D007537 ORTHO05D009602 3.3e-44 183.3 354 38.4
arahy.Tifrunner.gnm1.ann1.EU49LP Arachis hypogaea HOM05D007537 ORTHO05D009602 7.4e-44 182.2 407 35.4
Ah.10g036610 Amaranthus hybridus HOM05D007537 ORTHO05D009602 9.7e-44 181.8 396 39.1
Ca_05971_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 1.7e-43 181.0 370 36.8
Ca_05972_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 1.7e-43 181.0 370 36.8
Gohir.D13G016000 Gossypium hirsutum HOM05D007537 ORTHO05D009602 3.7e-43 179.9 397 37.0
arahy.Tifrunner.gnm1.ann1.QLS93X Arachis hypogaea HOM05D007537 ORTHO05D009602 4.8e-43 179.5 415 34.5
Gorai.013G017500 Gossypium raimondii HOM05D007537 ORTHO05D009602 4.8e-43 179.5 356 37.9
Lsat_1_v5_gn_8_12620 Lactuca sativa HOM05D007537 ORTHO05D009602 6.3e-43 179.1 300 42.3
MSTRG.27338 Avicennia marina HOM05D007537 ORTHO05D009602 8.2e-43 178.7 393 42.0
SGA_v2.0_scaffold44G16701 Striga asiatica HOM05D007537 ORTHO05D009602 1.4e-42 177.9 395 39.5
CARHR085730 Cardamine hirsuta HOM05D007537 ORTHO05D009602 3.1e-42 176.8 385 38.4
Haze_17238 Corylus avellana HOM05D007537 ORTHO05D009602 4.1e-42 176.4 373 38.3
GSVIVG01032801001 Vitis vinifera HOM05D007537 ORTHO05D009602 5.3e-42 176.0 340 39.7
Dinv21742 Davidia involucrata HOM05D007537 ORTHO05D009602 1.2e-41 174.9 214 47.2
ECA233G1171 Erigeron canadensis HOM05D007537 ORTHO05D009602 7.7e-41 172.2 376 39.4
BcaB04g21148 Brassica carinata HOM05D007537 ORTHO05D009602 2.2e-40 170.6 393 36.4
Aa31LG3G4310 Aethionema arabicum HOM05D007537 ORTHO05D009602 5.0e-40 169.5 379 36.4
Carub.0003s1045 Capsella rubella HOM05D007537 ORTHO05D009602 8.5e-40 168.7 394 37.1
EL10Ac2g04847 Beta vulgaris HOM05D007537 ORTHO05D009602 1.9e-39 167.5 401 39.7
AL3G22670 Arabidopsis lyrata HOM05D007537 ORTHO05D009602 3.2e-39 166.8 394 36.3
BolC1t05333H Brassica oleracea HOM05D007537 ORTHO05D009602 7.2e-39 165.6 393 36.1
Eucgr.J00197 Eucalyptus grandis HOM05D007537 ORTHO05D009602 7.2e-39 165.6 309 37.9
Phvul.008G223100 Phaseolus vulgaris HOM05D007537 ORTHO05D009602 9.4e-39 165.2 360 37.2
BcaC09g48157 Brassica carinata HOM05D007537 ORTHO05D009602 1.2e-38 164.9 393 35.9
Migut.F00693 Erythranthe guttata HOM05D007537 ORTHO05D009602 1.2e-38 164.9 336 39.3
Thhalv10020993m.g Eutrema salsugineum HOM05D007537 ORTHO05D009602 1.2e-38 164.9 382 36.4
Sp3g09450 Schrenkiella parvula HOM05D007537 ORTHO05D009602 2.7e-38 163.7 399 35.8
TPR.G38413 Trifolium pratense HOM05D007537 ORTHO05D009602 3.6e-38 163.3 349 38.1
Lalb_Chr04g0250531 Lupinus albus HOM05D007537 ORTHO05D009602 6.1e-38 162.5 352 36.4
AT3G11150 Arabidopsis thaliana HOM05D007537 ORTHO05D009602 3.0e-37 160.2 380 36.8
Gohir.A13G014800 Gossypium hirsutum HOM05D007537 ORTHO05D009602 1.3e-35 154.8 286 39.5
BraA01t04198Z Brassica rapa HOM05D007537 ORTHO05D009602 3.4e-33 146.7 387 34.1
CsaV3_5G010250 Cucumis sativus L. HOM05D007537 ORTHO05D009602 2.6e-25 120.6 256 36.7
HPP92_007582 Vanilla planifolia HOM05D007537 ORTHO05D009602 7.7e-25 119.0 386 33.4
MELO3C026792.2 Cucumis melo HOM05D007537 ORTHO05D009602 2.9e-24 117.1 258 36.0
MD01G1154400 Malus domestica HOM05D007537 ORTHO05D009602 1.8e-21 107.8 119 48.7
Os01g0830500 Oryza sativa ssp. japonica HOM05D007537 ORTHO05D009602 8.8e-21 105.5 359 35.4
BcaB04g21146 Brassica carinata HOM05D007537 ORTHO05D009602 1.2e-20 105.1 270 35.2
CSS0044280 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.3e-19 101.7 119 45.4
Atru.chr12.52 Acer truncatum HOM05D007537 ORTHO05D009602 2.8e-19 100.5 161 41.0
ATR0681G199 Amborella trichopoda HOM05D007537 ORTHO05D009602 7.0e-18 95.9 369 32.5
Oeu004690.1 Olea europaea HOM05D007537 ORTHO05D009602 4.4e-12 76.6 122 43.4
Oeu004692.1 Olea europaea HOM05D007537 ORTHO05D009602 1.4e-10 71.6 208 33.2
Glyma.14G058602 Glycine max HOM05D007537 ORTHO05D009602 2.7e-09 67.4 176 34.7
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 9.5e-07 58.9 397 25.9
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 9.5e-07 58.9 397 25.9


User provided reference genes

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