Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0001710 Simmondsia chinensis HOM05D003811 ORTHO05D004470 2.7e-181 638.6 344 100.0
Hund13780 Selenicereus undatus HOM05D003811 ORTHO05D004470 7.7e-104 381.3 366 61.2
EL10Ac2g04726 Beta vulgaris HOM05D003811 ORTHO05D004470 1.9e-94 350.1 375 59.2
Ah.10g036890 Amaranthus hybridus HOM05D003811 ORTHO05D004470 5.5e-94 348.6 371 56.1
Ah.16g102470 Amaranthus hybridus HOM05D003811 ORTHO05D008019 4.0e-92 342.4 383 56.4
Hund16072 Selenicereus undatus HOM05D003811 ORTHO05D004470 3.7e-90 335.9 387 54.5
AUR62012114 Chenopodium quinoa HOM05D003811 ORTHO05D004470 1.7e-87 327.0 374 55.3
AUR62040721 Chenopodium quinoa HOM05D003811 ORTHO05D004470 8.0e-85 318.2 374 54.3
Cfa013454 Carpinus fangiana HOM05D003811 ORTHO05D004470 3.1e-81 306.2 357 54.6
TAR620G0001 Trochodendron aralioides HOM05D003811 ORTHO05D004470 1.0e-76 291.2 354 54.2
CSS0000053 Camellia sinensis var. sinensis HOM05D003811 ORTHO05D004470 1.2e-75 287.7 347 54.5
CiPaw.07G197300 Carya illinoinensis HOM05D003811 ORTHO05D004470 1.5e-75 287.3 356 53.1
Peaxi162Scf01038g00011 Petunia axillaris HOM05D003811 ORTHO05D004470 1.3e-74 284.3 372 50.0
CAN.G192.5 Capsicum annuum HOM05D003811 ORTHO05D004470 1.7e-74 283.9 369 52.0
Nitab4.5_0000949g0010 Nicotiana tabacum HOM05D003811 ORTHO05D004470 3.1e-73 279.6 371 50.9
Nitab4.5_0000491g0080 Nicotiana tabacum HOM05D003811 ORTHO05D004470 1.2e-72 277.7 357 50.4
PGSC0003DMG400022983 Solanum tuberosum HOM05D003811 ORTHO05D004470 2.0e-72 276.9 376 48.4
Manes.06G019300 Manihot esculenta HOM05D003811 ORTHO05D004470 5.9e-72 275.4 371 51.8
Dinv25445 Davidia involucrata HOM05D003811 ORTHO05D004470 1.7e-71 273.9 353 52.4
Nitab4.5_0000949g0020 Nicotiana tabacum HOM05D003811 ORTHO05D004470 1.5e-70 270.8 367 50.7
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 4.3e-70 269.2 351 53.3
MD13G1239300 Malus domestica HOM05D003811 ORTHO05D004470 9.5e-70 268.1 380 48.9
Duzib168G0111 Durio zibethinus HOM05D003811 ORTHO05D004470 2.8e-69 266.5 368 51.1
Sopen07g004460 Solanum pennellii HOM05D003811 ORTHO05D004470 6.1e-69 265.4 377 48.5
Solyc07g008540.3 Solanum lycopersicum HOM05D003811 ORTHO05D004470 6.8e-68 261.9 378 48.4
Oeu006847.1 Olea europaea HOM05D003811 ORTHO05D004470 1.2e-67 261.2 360 48.3
FAN22G1182 Fragaria x ananassa HOM05D003811 ORTHO05D004470 4.4e-67 259.2 372 48.4
DCAR_018030 Daucus carota HOM05D003811 ORTHO05D004470 1.7e-66 257.3 363 49.0
Sabra18G0116100 Salix brachista HOM05D003811 ORTHO05D004470 2.2e-66 256.9 392 47.7
Cc06_g20840 Coffea canephora HOM05D003811 ORTHO05D004470 3.7e-66 256.1 395 47.6
FvH4_4g07270 Fragaria vesca HOM05D003811 ORTHO05D004470 1.4e-65 254.2 372 48.4
RcHm_v2.0_Chr4g0399481 Rosa chinensis HOM05D003811 ORTHO05D004470 2.4e-65 253.4 365 48.2
GSVIVG01010855001 Vitis vinifera HOM05D003811 ORTHO05D004470 3.2e-65 253.1 343 51.3
FAN17G0360 Fragaria x ananassa HOM05D003811 ORTHO05D004470 7.0e-65 251.9 373 48.0
Oeu018819.1 Olea europaea HOM05D003811 ORTHO05D004470 7.0e-65 251.9 352 48.3
Oeu019552.1 Olea europaea HOM05D003811 ORTHO05D004470 1.6e-64 250.8 363 47.1
Thecc.09G186300 Theobroma cacao HOM05D003811 ORTHO05D004470 1.6e-64 250.8 362 48.9
Aqoxy7G02811 Aquilegia oxysepala HOM05D003811 ORTHO05D004470 4.6e-64 249.2 365 49.0
MD16G1248400 Malus domestica HOM05D003811 ORTHO05D004470 5.9e-64 248.8 375 50.7
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 7.8e-64 248.4 373 48.0
Prupe.1G074900 Prunus persica HOM05D003811 ORTHO05D004470 1.1e-62 244.6 377 50.4
ClCG11G011760 Citrullus lanatus HOM05D003811 ORTHO05D004470 1.9e-62 243.8 384 48.2
Migut.L01879 Erythranthe guttata HOM05D003811 ORTHO05D004470 1.9e-62 243.8 359 47.6
Lj5C615T3 Lonicera japonica HOM05D003811 ORTHO05D004470 2.5e-62 243.4 377 46.7
vmacro05996 Vaccinium macrocarpon HOM05D003811 ORTHO05D004470 2.5e-62 243.4 365 47.9
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 7.3e-62 241.9 374 47.1
Lj5C612T1 Lonicera japonica HOM05D003811 ORTHO05D004470 1.2e-61 241.1 359 47.1
Rhsim03G0266200 Rhododendron simsii HOM05D003811 ORTHO05D004470 3.6e-61 239.6 362 47.0
TWI63G0214 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 6.2e-61 238.8 350 48.6
Nn8g40778 Nelumbo nucifera HOM05D003811 ORTHO05D004470 8.0e-61 238.4 354 51.1
Cpa.g.sc95.8 Carica papaya HOM05D003811 ORTHO05D004470 2.6e-59 233.4 388 46.9
Dinv41179 Davidia involucrata HOM05D003811 ORTHO05D004470 2.6e-59 233.4 356 48.3
Potri.006G075200 Populus trichocarpa HOM05D003811 ORTHO05D004470 2.6e-59 233.4 379 45.6
Hma1.2p1_1326F.1_g275850 Hydrangea macrophylla HOM05D003811 ORTHO05D004470 3.4e-59 233.0 354 47.5
MELO3C003975.2 Cucumis melo HOM05D003811 ORTHO05D004470 4.4e-59 232.6 391 47.8
arahy.Tifrunner.gnm1.ann1.YRC4PH Arachis hypogaea HOM05D003811 ORTHO05D004470 7.5e-59 231.9 380 45.8
Ciclev10008308m.g Citrus clementina HOM05D003811 ORTHO05D004470 7.5e-59 231.9 384 48.2
VMungo1215G0314 Vigna mungo HOM05D003811 ORTHO05D004470 1.3e-58 231.1 362 45.9
CsaV3_2G008720 Cucumis sativus L. HOM05D003811 ORTHO05D004470 2.2e-58 230.3 378 48.7
Oeu034800.1 Olea europaea HOM05D003811 ORTHO05D004470 2.2e-58 230.3 355 46.5
arahy.Tifrunner.gnm1.ann1.0QJD35 Arachis hypogaea HOM05D003811 ORTHO05D004470 2.9e-58 229.9 379 45.9
Rhsim01G0116800 Rhododendron simsii HOM05D003811 ORTHO05D004470 3.7e-58 229.6 355 45.1
DCAR_014667 Daucus carota HOM05D003811 ORTHO05D004470 4.9e-58 229.2 350 47.7
Eucgr.C00112 Eucalyptus grandis HOM05D003811 ORTHO05D004470 1.1e-57 228.0 364 48.9
MBI13_g34046_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 1.1e-57 228.0 361 46.0
Manes.14G159300 Manihot esculenta HOM05D003811 ORTHO05D004470 1.9e-57 227.3 361 47.9
Atru.chr7.754 Acer truncatum HOM05D003811 ORTHO05D004470 2.4e-57 226.9 347 47.0
Atru.chr7.775 Acer truncatum HOM05D003811 ORTHO05D004470 2.4e-57 226.9 347 47.0
Potri.018G142100 Populus trichocarpa HOM05D003811 ORTHO05D004470 2.4e-57 226.9 407 43.7
Duzib150G1212 Durio zibethinus HOM05D003811 ORTHO05D004470 4.1e-57 226.1 358 46.1
Migut.J00797 Erythranthe guttata HOM05D003811 ORTHO05D004470 4.1e-57 226.1 366 45.1
TWI34G1601 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 5.4e-57 225.7 349 47.6
Sed0004951 Sechium edule HOM05D003811 ORTHO05D004470 7.8e-56 221.9 371 46.1
Psat4g013600 Pisum sativum HOM05D003811 ORTHO05D004470 1.3e-55 221.1 364 46.4
Sabra06G0055900 Salix brachista HOM05D003811 ORTHO05D004470 1.7e-55 220.7 374 44.9
FvH4_6g24780 Fragaria vesca HOM05D003811 ORTHO05D004470 6.6e-55 218.8 362 44.8
FAN02G0923 Fragaria x ananassa HOM05D003811 ORTHO05D004470 8.6e-55 218.4 360 44.2
MSTRG.10438 Avicennia marina HOM05D003811 ORTHO05D004470 5.6e-54 215.7 348 42.2
Lj4g0014027 Lotus japonicus HOM05D003811 ORTHO05D004470 1.2e-53 214.5 359 45.4
Sed0025374 Sechium edule HOM05D003811 ORTHO05D004470 8.1e-53 211.8 350 45.4
Glyma.13G100700 Glycine max HOM05D003811 ORTHO05D004470 2.3e-52 210.3 364 44.2
Lsat_1_v5_gn_7_56240 Lactuca sativa HOM05D003811 ORTHO05D004470 2.3e-52 210.3 368 44.6
SalBow5G4432 Salvia bowleyana HOM05D003811 ORTHO05D004470 4.0e-52 209.5 342 43.3
SalBow5G0957 Salvia bowleyana HOM05D003811 ORTHO05D004470 6.8e-52 208.8 342 43.0
Ca_27932_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 1.5e-51 207.6 365 43.8
Glyma.17G059100 Glycine max HOM05D003811 ORTHO05D004470 2.0e-51 207.2 361 43.8
Medtr4g127420 Medicago truncatula HOM05D003811 ORTHO05D004470 2.0e-51 207.2 352 45.2
Lalb_Chr12g0199621 Lupinus albus HOM05D003811 ORTHO05D004470 1.3e-50 204.5 354 44.1
Lalb_Chr07g0180651 Lupinus albus HOM05D003811 ORTHO05D004470 3.7e-50 203.0 354 42.9
Lsat_1_v5_gn_5_83141 Lactuca sativa HOM05D003811 ORTHO05D004470 4.9e-50 202.6 350 49.7
Lalb_Chr13g0299991 Lupinus albus HOM05D003811 ORTHO05D004470 4.9e-50 202.6 354 43.5
HanXRQChr03g0065501 Helianthus annuus HOM05D003811 ORTHO05D004470 1.1e-49 201.4 429 40.1
MSTRG.26548 Avicennia marina HOM05D003811 ORTHO05D004470 3.2e-49 199.9 348 43.7
MBI16_g05834_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 7.1e-49 198.7 341 44.6
HanXRQChr09g0245431 Helianthus annuus HOM05D003811 ORTHO05D004470 4.6e-48 196.1 405 40.2
Phvul.003G141200 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 4.6e-48 196.1 356 41.9
Aa31LG3G13080 Aethionema arabicum HOM05D003811 ORTHO05D004470 6.6e-47 192.2 401 41.9
Sp6g18910 Schrenkiella parvula HOM05D003811 ORTHO05D004470 1.1e-46 191.4 397 37.0
Thhalv10013517m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 4.3e-46 189.5 384 39.1
QL02p046940 Quercus lobata HOM05D003811 ORTHO05D004470 9.5e-46 188.3 382 41.9
TPR.G32975 Trifolium pratense HOM05D003811 ORTHO05D004470 8.1e-45 185.3 371 42.3
COL.COLO4_07099 Corchorus olitorius HOM05D003811 ORTHO05D004470 1.2e-43 181.4 365 44.9
PSO170G1122 Papaver somniferum HOM05D003811 ORTHO05D004470 4.4e-43 179.5 387 40.8
PSO063G0992 Papaver somniferum HOM05D003811 ORTHO05D004470 5.8e-43 179.1 390 40.8
BcaB05g22326 Brassica carinata HOM05D003811 ORTHO05D004470 3.7e-42 176.4 382 38.0
PGR001G0001 Punica granatum HOM05D003811 ORTHO05D004470 3.7e-42 176.4 356 41.9
CiPaw.08G032400 Carya illinoinensis HOM05D003811 ORTHO05D004470 1.1e-41 174.9 358 39.4
A02p08670 Brassica napus HOM05D003811 ORTHO05D004470 2.4e-41 173.7 344 40.4
BraA02t05937Z Brassica rapa HOM05D003811 ORTHO05D004470 2.4e-41 173.7 346 40.5
Lsat_1_v5_gn_8_69001 Lactuca sativa HOM05D003811 ORTHO05D004470 4.1e-41 172.9 347 41.2
CDE06G2566 Ceratophyllum demersum HOM05D003811 ORTHO05D004470 5.4e-41 172.6 347 42.1
BolC9t57752H Brassica oleracea HOM05D003811 ORTHO05D004470 1.2e-40 171.4 338 40.2
HanXRQChr10g0308851 Helianthus annuus HOM05D003811 ORTHO05D004470 2.7e-40 170.2 354 42.1
BcaC03g14176 Brassica carinata HOM05D003811 ORTHO05D004470 3.5e-40 169.9 351 39.0
C02p14510 Brassica napus HOM05D003811 ORTHO05D004470 3.5e-40 169.9 351 39.0
BolC2t07575H Brassica oleracea HOM05D003811 ORTHO05D004470 3.5e-40 169.9 351 39.0
Thhalv10025322m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 7.8e-40 168.7 365 39.2
AL8G33110 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 1.7e-39 167.5 381 37.0
BraA01t01681Z Brassica rapa HOM05D003811 ORTHO05D004470 3.9e-39 166.4 365 39.5
C01p21610 Brassica napus HOM05D003811 ORTHO05D004470 5.1e-39 166.0 361 39.3
BolC1t02080H Brassica oleracea HOM05D003811 ORTHO05D004470 5.1e-39 166.0 361 39.3
unitig_8.g4051 Utricularia gibba HOM05D003811 ORTHO05D004470 5.1e-39 166.0 271 45.0
BcaC09g50723 Brassica carinata HOM05D003811 ORTHO05D004470 6.6e-39 165.6 361 39.3
C09p49010 Brassica napus HOM05D003811 ORTHO05D004470 6.6e-39 165.6 337 39.8
A01p17250 Brassica napus HOM05D003811 ORTHO05D004470 1.1e-38 164.9 365 39.5
Eucgr.C02219 Eucalyptus grandis HOM05D003811 ORTHO05D004470 4.3e-38 162.9 358 39.1
SGA_v2.0_scaffold31G12764 Striga asiatica HOM05D003811 ORTHO05D004470 7.3e-38 162.2 363 39.7
BcaC04g19992 Brassica carinata HOM05D003811 ORTHO05D004470 1.6e-37 161.0 337 39.5
AL7G27010 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 2.1e-37 160.6 362 36.2
ECA240G2391 Erigeron canadensis HOM05D003811 ORTHO05D004470 3.6e-37 159.8 364 37.4
AT5G57180 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 4.7e-37 159.5 380 37.4
BcaB08g36076 Brassica carinata HOM05D003811 ORTHO05D004470 1.8e-36 157.5 371 37.2
CARHR270970 Cardamine hirsuta HOM05D003811 ORTHO05D004470 5.2e-36 156.0 378 36.8
Sp7g24010 Schrenkiella parvula HOM05D003811 ORTHO05D004470 2.0e-35 154.1 376 37.5
unitig_22.g5159 Utricularia gibba HOM05D003811 ORTHO05D004470 2.0e-35 154.1 275 42.2
A10p14570 Brassica napus HOM05D003811 ORTHO05D004470 4.4e-35 152.9 329 38.6
CARHR233500 Cardamine hirsuta HOM05D003811 ORTHO05D004470 4.4e-35 152.9 352 36.1
Gohir.D05G002600 Gossypium hirsutum HOM05D003811 ORTHO05D004470 9.9e-35 151.8 349 39.8
BraA10t43544Z Brassica rapa HOM05D003811 ORTHO05D004470 1.7e-34 151.0 329 38.6
Gohir.A05G002200 Gossypium hirsutum HOM05D003811 ORTHO05D004470 2.9e-34 150.2 349 40.4
BcaC06g32778 Brassica carinata HOM05D003811 ORTHO05D004470 6.4e-34 149.1 357 38.7
Gorai.009G002400 Gossypium raimondii HOM05D003811 ORTHO05D004470 8.4e-34 148.7 349 39.3
AT4G25990 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 9.3e-33 145.2 361 34.3
Carub.0007s1496 Capsella rubella HOM05D003811 ORTHO05D004470 1.2e-32 144.8 367 35.4
BraA03t14705Z Brassica rapa HOM05D003811 ORTHO05D004470 2.1e-32 144.1 354 37.9
BolC7t45947H Brassica oleracea HOM05D003811 ORTHO05D004470 3.5e-32 143.3 363 36.6
BcaNung03775 Brassica carinata HOM05D003811 ORTHO05D004470 6.0e-32 142.5 359 37.0
Carub.0008s1769 Capsella rubella HOM05D003811 ORTHO05D004470 1.7e-31 141.0 379 34.6
C07p54590 Brassica napus HOM05D003811 ORTHO05D004470 5.1e-31 139.4 364 36.8
Actinidia38496 Actinidia chinensis HOM05D003811 ORTHO05D004470 7.3e-30 135.6 184 48.4
HPP92_010287 Vanilla planifolia HOM05D003811 ORTHO05D004470 2.1e-29 134.0 353 36.8
Glyma.15G166500 Glycine max HOM05D003811 ORTHO05D004470 2.6e-27 127.1 305 36.4
HanXRQChr05g0141071 Helianthus annuus HOM05D003811 ORTHO05D004470 1.3e-26 124.8 359 34.3
SGA_v2.0_scaffold112G31580 Striga asiatica HOM05D003811 ORTHO05D004470 2.2e-26 124.0 283 36.7
A03p56350 Brassica napus HOM05D003811 ORTHO05D004470 2.9e-26 123.6 350 34.3
Psat1g144040 Pisum sativum HOM05D003811 ORTHO05D004470 4.9e-26 122.9 343 37.0
SGA_v2.0_scaffold511G52626 Striga asiatica HOM05D003811 ORTHO05D004470 2.4e-25 120.6 335 34.6
Ca_02108_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 3.2e-25 120.2 351 35.6
Glyma.09G059800 Glycine max HOM05D003811 ORTHO05D004470 2.7e-24 117.1 343 33.5
Oeu064847.1 Olea europaea HOM05D003811 ORTHO05D004470 2.3e-23 114.0 113 59.3
HPP92_017127 Vanilla planifolia HOM05D003811 ORTHO05D004470 3.0e-23 113.6 365 34.2
TPR.G7568 Trifolium pratense HOM05D002228 ORTHO05D002347 6.6e-23 112.5 334 35.6
Medtr2g038010 Medicago truncatula HOM05D003811 ORTHO05D004470 1.5e-22 111.3 341 33.7
Phvul.009G236100 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 2.5e-22 110.5 300 34.7
FAN05G5342 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.3e-21 108.2 117 59.8
FAN05G4809 Fragaria x ananassa HOM05D003811 ORTHO05D004470 5.3e-20 102.8 198 37.9
Actinidia29953 Actinidia chinensis HOM05D003811 ORTHO05D004470 6.9e-20 102.4 170 43.5
ECA236G3708 Erigeron canadensis HOM05D003811 ORTHO05D004470 9.9e-19 98.6 284 34.5
ECA234G4485 Erigeron canadensis HOM05D003811 ORTHO05D004470 4.9e-18 96.3 212 41.0
ATR0626G357 Amborella trichopoda HOM05D003811 ORTHO05D004470 1.6e-16 91.3 389 31.1
Zm00001eb272980 Zea mays HOM05D018649 ORTHO05D004470 1.8e-15 87.8 384 29.7
Zm00001eb226810 Zea mays HOM05D018649 ORTHO05D004470 3.0e-15 87.0 367 28.9
Zm00001eb208040 Zea mays HOM05D003811 ORTHO05D004470 7.6e-11 72.4 397 27.2
FAN24G1311 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.1e-09 68.6 106 43.4
FvH4_2g01490 Fragaria vesca HOM05D003811 ORTHO05D004470 4.2e-09 66.6 106 42.5
Os06g0699600 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 4.2e-09 66.6 353 27.5
Os02g0148000 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 7.1e-09 65.9 411 25.8
Lsat_1_v5_gn_6_95500 Lactuca sativa HOM05D003811 ORTHO05D004470 1.0e-07 62.0 154 33.1


User provided reference genes

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