Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 7.8e-173 610.5 346 100.0
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 2.0e-115 419.9 362 69.3
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.0e-108 397.5 350 66.6
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 1.8e-108 396.7 351 65.5
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 4.4e-107 392.1 352 65.6
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 3.1e-105 386.0 352 64.5
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 5.3e-105 385.2 332 65.4
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 2.9e-103 379.4 348 64.9
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 6.5e-103 378.3 351 64.4
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.1e-102 377.5 352 64.5
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.9e-102 376.7 353 62.3
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.1e-101 373.2 351 64.1
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 6.1e-101 371.7 352 62.2
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.0e-101 371.3 351 63.8
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.0e-100 370.9 351 63.8
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 8.8e-100 367.9 353 62.3
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.2e-99 367.5 352 63.4
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.2e-99 367.5 353 62.3
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 4.4e-99 365.5 352 63.4
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 5.7e-99 365.2 350 62.9
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 9.8e-99 364.4 350 63.1
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.3e-98 364.0 349 62.5
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.7e-98 363.6 354 61.9
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 2.8e-98 362.8 354 61.9
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 4.8e-98 362.1 352 61.9
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 8.3e-98 361.3 349 61.6
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.4e-97 360.5 352 60.8
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.1e-97 359.4 350 60.9
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 7.0e-97 358.2 349 62.8
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 9.1e-97 357.8 352 60.8
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 2.7e-96 356.3 365 60.5
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 7.7e-96 354.8 355 60.3
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 5.0e-95 352.1 359 59.6
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 8.6e-95 351.3 354 60.7
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 8.6e-95 351.3 353 61.2
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.5e-94 350.5 347 61.7
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.9e-94 350.1 350 58.6
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 4.2e-94 349.0 350 60.0
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 5.5e-94 348.6 348 59.8
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 7.2e-94 348.2 349 61.0
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 2.1e-93 346.7 352 59.9
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 2.1e-93 346.7 351 60.7
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 2.8e-93 346.3 353 62.0
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.6e-93 345.9 348 61.8
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 8.0e-93 344.7 353 60.6
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.0e-92 344.4 352 59.9
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.0e-92 342.4 352 61.9
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.0e-92 342.4 352 61.9
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 5.2e-92 342.0 350 59.7
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 6.8e-92 341.7 349 59.6
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 6.8e-92 341.7 352 60.2
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 2.0e-91 340.1 353 59.5
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 3.4e-91 339.3 360 58.9
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 9.8e-91 337.8 348 60.6
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 9.8e-91 337.8 348 59.5
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 9.8e-91 337.8 350 58.9
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.3e-90 337.4 350 58.6
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.3e-90 337.4 353 57.5
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.7e-90 337.0 350 58.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 1.7e-90 337.0 349 59.3
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 2.2e-90 336.7 351 58.7
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 1.4e-89 334.0 347 58.8
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.4e-89 334.0 350 58.3
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.8e-89 333.6 350 58.0
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.8e-89 333.6 368 59.2
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 4.1e-89 332.4 347 58.8
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 4.1e-89 332.4 348 58.6
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 4.1e-89 332.4 348 58.6
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 4.1e-89 332.4 353 58.6
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 7.0e-89 331.6 350 59.1
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 3.5e-88 329.3 351 58.7
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 1.7e-87 327.0 351 58.7
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.7e-87 327.0 350 57.4
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 2.9e-87 326.2 347 57.9
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 8.6e-87 324.7 351 58.4
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 8.6e-87 324.7 347 57.6
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.5e-86 323.2 350 57.7
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.5e-86 323.2 350 57.7
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 4.3e-86 322.4 370 57.6
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.2e-85 320.9 348 58.3
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 6.8e-84 315.1 350 57.7
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 8.9e-84 314.7 341 57.8
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 8.9e-84 314.7 338 58.0
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 8.9e-84 314.7 396 52.8
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 4.4e-83 312.4 352 57.4
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 6.4e-82 308.5 420 48.6
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 2.0e-80 303.5 333 56.2
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 3.5e-80 302.8 343 56.6
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 7.8e-80 301.6 354 55.6
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 8.6e-79 298.1 352 56.0
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 7.3e-78 295.0 342 54.4
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.4e-76 290.8 377 50.7
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 9.8e-75 284.6 300 59.0
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 5.4e-73 278.9 350 50.0
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 7.8e-72 275.0 349 50.7
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 2.2e-66 256.9 260 60.8
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 6.4e-66 255.4 350 49.7
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 9.5e-62 241.5 351 49.0
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 3.8e-58 229.6 329 47.1
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 2.7e-56 223.4 232 60.3
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 5.1e-55 219.2 233 56.2
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 9.0e-52 208.4 233 53.6
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 4.4e-51 206.1 232 56.0
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 2.7e-48 196.8 208 60.1
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 7.8e-48 195.3 317 43.8
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 3.6e-45 186.4 199 58.3
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 4.8e-45 186.0 232 53.0
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 6.2e-45 185.7 182 59.9
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 2.6e-43 180.3 143 72.7
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 2.7e-40 170.2 292 42.5
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.6e-37 161.0 377 36.3
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 3.4e-35 153.3 200 54.0
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 7.1e-33 145.6 157 59.2
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 6.0e-32 142.5 282 37.9
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 1.8e-31 141.0 232 45.7
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 9.0e-28 128.6 110 65.5
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 4.9e-26 122.9 95 68.4
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.6e-24 117.9 226 40.3
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 1.5e-22 111.3 366 30.1
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.3e-21 108.2 271 37.6
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 1.2e-19 101.7 102 55.9
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 2.9e-18 97.1 92 59.8
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 1.4e-17 94.7 74 67.6
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 2.5e-17 94.0 159 40.3
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 4.3e-14 83.2 96 49.0
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 2.2e-13 80.9 124 42.7
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 1.1e-12 78.6 77 58.4
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 1.7e-10 71.2 87 49.4
Sopen03g009730 Solanum pennellii HOM05D005714 ORTHO05D006812 7.2e-09 65.9 87 50.6
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 9.4e-09 65.5 224 32.1
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.8e-07 61.2 46 71.7


User provided reference genes

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