Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.0e-126 456.8 246 100.0
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.5e-96 355.9 249 75.9
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.6e-93 345.9 242 78.1
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 9.7e-93 344.0 243 70.4
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 2.4e-91 339.3 243 70.8
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 3.5e-90 335.5 243 70.4
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 3.5e-90 335.5 243 70.0
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 3.5e-90 335.5 244 69.7
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 4.5e-90 335.1 247 68.8
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 4.5e-90 335.1 245 69.0
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.3e-89 333.6 247 70.9
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.3e-89 333.6 245 70.2
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.9e-89 332.4 243 70.0
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.9e-89 332.4 245 69.0
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.9e-89 332.4 248 70.6
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 3.8e-89 332.0 249 72.7
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 3.8e-89 332.0 244 69.3
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 3.8e-89 332.0 243 71.2
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.1e-88 330.5 243 69.1
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.5e-88 330.1 243 67.1
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 7.2e-88 327.8 245 69.0
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.6e-87 326.6 244 69.7
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 2.1e-87 326.2 243 67.9
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.7e-87 325.9 247 70.9
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 8.0e-87 324.3 243 65.8
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.0e-86 323.9 240 68.3
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.4e-86 323.6 245 68.6
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-86 323.6 240 67.1
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.4e-86 323.6 247 66.8
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.8e-86 323.2 242 68.6
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.8e-86 323.2 245 66.5
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.3e-86 322.8 243 69.5
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 3.0e-86 322.4 243 69.1
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 3.0e-86 322.4 247 72.9
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.0e-86 322.4 239 69.9
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 4.0e-86 322.0 243 66.3
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 5.2e-86 321.6 249 66.3
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 5.2e-86 321.6 243 68.7
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 6.7e-86 321.2 245 66.1
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.3e-85 318.9 244 65.2
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.3e-85 318.9 243 66.3
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 4.4e-85 318.5 244 67.6
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.7e-85 318.2 243 66.3
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 7.5e-85 317.8 245 66.5
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 9.7e-85 317.4 247 69.2
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.7e-85 317.4 256 64.5
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 9.7e-85 317.4 242 66.1
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.2e-84 316.2 243 65.8
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.8e-84 315.8 243 70.0
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 1.4e-83 313.5 243 64.2
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-83 313.5 243 71.2
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.8e-83 313.2 253 63.2
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.8e-83 313.2 241 65.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 3.1e-83 312.4 243 65.4
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-82 310.5 243 70.8
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.6e-82 310.1 253 62.8
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 2.0e-82 309.7 243 67.9
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 4.5e-82 308.5 242 64.9
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.5e-82 308.5 241 65.1
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 7.7e-82 307.8 242 64.9
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.3e-81 307.0 245 67.3
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.3e-81 307.0 248 64.9
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.7e-81 306.6 243 68.7
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.7e-81 306.6 243 70.4
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 2.9e-81 305.8 246 66.7
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 2.9e-81 305.8 250 66.0
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 6.5e-81 304.7 246 65.0
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 2.5e-80 302.8 242 65.7
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 3.2e-80 302.4 239 66.1
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 9.4e-80 300.8 243 63.0
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.2e-79 300.4 243 68.3
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.6e-79 300.1 242 69.4
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.6e-79 300.1 294 58.2
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.1e-79 299.7 241 68.5
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.1e-79 299.7 239 70.7
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 2.3e-78 296.2 265 60.0
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 3.0e-78 295.8 239 64.0
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 8.8e-78 294.3 243 65.8
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.6e-77 292.7 239 67.4
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.4e-77 292.4 239 62.8
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 3.4e-77 292.4 244 68.0
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.4e-77 292.4 239 63.2
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 7.5e-77 291.2 244 66.4
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 9.8e-77 290.8 239 62.3
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.7e-76 290.0 243 67.9
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.7e-76 288.9 242 66.1
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.1e-75 287.3 242 64.9
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.8e-75 286.6 239 66.9
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.8e-75 286.6 216 68.1
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 4.1e-75 285.4 240 61.2
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 9.1e-75 284.3 239 64.4
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 5.9e-74 281.6 245 64.9
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 5.9e-74 281.6 242 59.5
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 7.7e-74 281.2 245 60.4
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 7.7e-74 281.2 243 63.0
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.0e-73 280.8 243 63.8
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.0e-73 280.8 243 63.0
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 1.3e-73 280.4 239 63.2
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 3.8e-73 278.9 247 63.2
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 5.0e-73 278.5 240 58.3
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.9e-72 276.6 243 61.7
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 7.2e-72 274.6 243 61.3
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 9.4e-72 274.2 255 55.3
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.6e-71 272.3 242 62.4
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.0e-70 270.8 244 59.4
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.4e-70 270.4 244 58.6
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.8e-70 270.0 243 59.7
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 8.8e-70 267.7 241 63.5
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.5e-69 266.9 239 59.8
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.0e-69 266.5 244 56.1
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.4e-69 265.8 240 59.6
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 3.4e-69 265.8 243 58.8
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.7e-69 265.0 245 56.7
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.3e-68 263.8 205 69.8
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 3.1e-67 259.2 239 57.7
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 3.1e-67 259.2 250 57.6
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 4.1e-67 258.8 244 63.1
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.7e-66 256.1 245 58.4
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 3.5e-66 255.8 239 61.5
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 4.5e-66 255.4 240 59.2
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.0e-65 254.2 252 56.3
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 3.8e-65 252.3 241 56.4
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.0e-65 251.9 249 56.6
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.9e-64 250.0 242 57.0
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.9e-64 250.0 242 57.0
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 2.5e-64 249.6 244 51.2
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 4.3e-64 248.8 239 55.6
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 5.6e-64 248.4 247 53.4
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.2e-63 247.3 253 52.2
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.6e-63 246.9 239 55.2
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 2.1e-63 246.5 239 56.5
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 6.1e-63 245.0 186 69.4
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 8.0e-63 244.6 205 65.9
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.3e-62 243.0 240 54.6
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 2.3e-62 243.0 240 54.6
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.0e-62 242.7 241 56.0
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 5.2e-62 241.9 240 54.6
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.2e-61 240.7 240 55.4
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 2.0e-61 240.0 247 53.8
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.6e-61 239.6 239 54.8
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.6e-61 239.6 239 53.1
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 7.5e-61 238.0 241 56.0
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.1e-59 234.2 242 55.4
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.4e-59 233.8 246 52.0
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.0e-58 229.9 239 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 2.8e-55 219.5 234 47.4
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 8.0e-55 218.0 172 69.2
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.0e-53 213.4 298 48.7
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.4e-52 208.4 240 52.1
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 1.6e-50 203.8 235 48.5
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.7e-50 203.0 152 66.4
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 3.1e-46 189.5 233 40.3
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 9.8e-45 184.5 238 43.3
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 3.0e-41 172.9 152 59.2
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-40 170.2 111 75.7
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.7e-39 165.6 108 75.0
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 3.6e-31 139.4 117 63.2
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 6.2e-31 138.7 111 66.7
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 6.9e-30 135.2 84 77.4
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.4e-29 132.9 163 44.8
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 4.4e-29 132.5 177 42.4
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.8e-28 129.4 102 66.7
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.8e-28 129.4 177 43.5
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 6.0e-26 122.1 103 54.4
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.3e-25 120.9 73 74.0
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.8e-23 112.5 68 80.9
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.3e-20 104.4 63 71.4
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 7.4e-16 88.6 54 63.0
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 3.8e-12 76.3 43 86.0
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 5.5e-11 72.4 111 34.2
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 4.6e-10 69.3 104 41.3
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.5e-08 63.5 42 61.9
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 6.9e-06 55.5 141 27.0


User provided reference genes

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