Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 1.8e-75 285.8 142 100.0
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 4.6e-63 244.6 141 80.9
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 4.3e-61 238.0 142 78.9
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 6.3e-60 234.2 142 77.5
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 6.3e-60 234.2 142 76.8
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.1e-59 233.4 142 77.5
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.8e-59 232.6 142 76.8
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 2.4e-59 232.3 140 78.6
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 4.1e-59 231.5 142 74.6
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 5.3e-59 231.1 142 75.4
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 5.3e-59 231.1 142 76.1
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.5e-58 229.6 142 76.8
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.5e-58 229.6 142 76.8
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 2.6e-58 228.8 142 74.6
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 7.6e-58 227.3 141 76.6
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 7.6e-58 227.3 142 76.1
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 7.6e-58 227.3 142 76.1
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 71.1
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 71.1
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 72.5
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.7e-57 226.1 141 75.9
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.7e-57 226.1 141 75.9
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 2.2e-57 225.7 140 74.3
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.2e-57 225.7 140 71.4
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 73.2
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 71.8
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 71.8
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 77.5
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 69.7
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 69.7
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 69.0
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.4e-56 223.0 141 74.5
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 69.7
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 69.0
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 69.0
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 74.6
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 69.7
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 69.0
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 69.0
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 69.0
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 73.9
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 69.0
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 9.3e-56 220.3 142 69.0
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 69.0
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 73.9
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 69.7
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 69.0
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 69.0
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 69.0
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 73.9
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 71.1
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 2.1e-55 219.2 142 68.3
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 73.2
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 3.6e-55 218.4 141 72.3
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 3.6e-55 218.4 142 73.2
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 4.6e-55 218.0 139 72.7
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 70.4
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 73.2
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 6.1e-55 217.6 141 73.8
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 6.1e-55 217.6 142 68.3
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 7.9e-55 217.2 142 68.3
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 7.9e-55 217.2 142 68.3
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.3e-54 216.5 145 71.7
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.3e-54 216.5 142 71.1
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.8e-54 216.1 145 71.7
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.8e-54 216.1 142 69.0
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.8e-54 216.1 142 68.3
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 2.3e-54 215.7 139 74.1
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 2.3e-54 215.7 142 67.6
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 3.0e-54 215.3 142 67.6
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.0e-54 215.3 142 71.8
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 3.9e-54 214.9 142 70.4
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.9e-54 214.9 139 71.9
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 69.0
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 5.1e-54 214.5 141 70.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 6.7e-54 214.2 143 72.0
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.7e-54 214.2 142 69.7
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 6.7e-54 214.2 142 69.0
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.1e-53 213.4 141 70.9
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 70.4
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 69.7
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 1.9e-53 212.6 145 71.7
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.9e-53 212.6 142 66.9
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.5e-53 212.2 142 69.0
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 4.3e-53 211.5 142 67.6
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 5.7e-53 211.1 142 67.6
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 7.4e-53 210.7 142 70.4
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 68.8
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 69.5
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 9.7e-53 210.3 142 66.9
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.3e-52 209.9 142 67.6
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.8e-52 208.8 135 71.9
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.8e-52 208.8 142 69.7
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.4e-51 206.5 193 57.5
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.4e-51 206.5 193 57.5
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 9.1e-51 203.8 142 70.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 1.5e-50 203.0 140 67.9
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.0e-50 202.6 142 64.8
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 2.6e-50 202.2 142 66.9
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 4.5e-50 201.4 142 64.8
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 5.9e-50 201.1 140 67.1
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 5.9e-50 201.1 140 67.1
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 7.7e-50 200.7 142 64.8
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.0e-49 200.3 163 62.6
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.3e-49 199.9 170 58.2
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.2e-49 199.1 142 70.4
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 2.9e-49 198.7 142 66.9
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 2.9e-49 198.7 142 63.4
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 3.8e-49 198.4 191 51.3
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 5.0e-49 198.0 141 65.2
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 6.5e-49 197.6 142 66.9
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 6.5e-49 197.6 141 67.4
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.4e-48 196.4 142 65.5
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 2.5e-48 195.7 142 68.3
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.5e-48 195.7 138 66.7
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.2e-48 195.3 142 65.5
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 3.2e-48 195.3 136 65.4
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 9.4e-48 193.7 137 64.2
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 9.4e-48 193.7 141 64.5
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.6e-47 193.0 143 66.4
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 2.7e-47 192.2 141 63.8
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 3.6e-47 191.8 138 65.2
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 6.1e-47 191.0 144 64.6
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 6.1e-47 191.0 144 65.3
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 1.4e-46 189.9 142 61.3
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.8e-46 189.5 140 63.6
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 8.8e-46 187.2 117 75.2
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.1e-45 186.8 138 63.8
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 3.3e-45 185.3 132 65.9
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 7.4e-45 184.1 132 65.2
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.7e-44 183.0 140 65.7
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.7e-44 183.0 134 63.4
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 4.8e-44 181.4 157 59.9
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.4e-43 179.9 142 62.0
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.4e-43 179.1 134 64.2
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 6.9e-43 177.6 140 61.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.6e-42 175.6 175 53.7
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 3.4e-42 175.3 142 60.6
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 5.9e-42 174.5 108 77.8
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 1.7e-41 172.9 141 61.0
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.7e-41 172.9 142 59.2
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.7e-41 172.9 139 60.4
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.0e-38 163.7 141 57.4
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 7.4e-37 157.5 139 61.2
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.1e-35 152.1 141 56.0
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 4.1e-35 151.8 140 50.0
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 5.3e-35 151.4 145 55.9
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 5.9e-34 147.9 289 34.9
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 7.7e-34 147.5 136 50.7
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 2.2e-33 146.0 142 48.6
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.2e-33 146.0 136 50.0
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.5e-33 144.4 139 54.0
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-32 143.3 139 54.0
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 5.3e-27 124.8 124 46.0
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 2.0e-26 122.9 132 47.7
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.9e-24 116.3 73 72.6
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 9.4e-24 114.0 80 67.5
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 8.0e-23 110.9 80 65.0
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.3e-20 101.3 109 50.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.3e-20 101.3 109 50.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.3e-20 101.3 109 50.5
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.8e-19 99.8 77 66.2
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 3.5e-18 95.5 115 45.2
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.0e-17 94.0 67 62.7
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.3e-17 93.6 67 62.7
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 1.1e-16 90.5 77 57.1
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 2.5e-16 89.4 59 67.8
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 2.5e-16 89.4 59 67.8
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 1.2e-15 87.0 116 37.9
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.2e-15 87.0 87 51.7
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 1.6e-15 86.7 119 42.0
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 3.6e-15 85.5 112 44.6
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 7.5e-13 77.8 68 54.4
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 9.8e-13 77.4 68 55.9
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 3.7e-12 75.5 115 41.7
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 6.6e-09 64.7 39 66.7
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 6.6e-09 64.7 120 35.0
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.9e-08 63.2 46 63.0
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 1.6e-07 60.1 62 56.5
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 2.1e-07 59.7 42 64.3
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.8e-07 59.3 38 68.4
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 2.3e-06 56.2 32 75.0
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 2.3e-06 56.2 34 67.6
TAR381G1165 Trochodendron aralioides HOM05D000503 ORTHO05D000361 4.0e-06 55.5 92 43.5
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 5.2e-06 55.1 71 43.7
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 5.2e-06 55.1 34 64.7


User provided reference genes

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