Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.0e-298 1029.2 512 100.0
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 5.3e-117 425.6 402 56.7
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 7.1e-114 415.2 409 53.5
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 1.3e-110 404.4 411 52.1
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 4.1e-109 399.4 395 52.2
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 5.9e-108 395.6 381 54.6
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 8.5e-107 391.7 401 51.9
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 1.4e-106 391.0 394 51.5
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 6.1e-105 385.6 419 50.4
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 8.7e-104 381.7 408 51.2
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 3.3e-103 379.8 387 51.9
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 3.3e-103 379.8 388 51.8
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 3.7e-102 376.3 396 51.8
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.8e-101 374.0 406 48.5
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 4.1e-101 372.9 402 47.3
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 4.1e-101 372.9 412 49.8
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 5.3e-101 372.5 407 52.3
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.9e-101 372.1 396 51.3
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 3.4e-100 369.8 395 49.1
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 3.4e-100 369.8 404 50.0
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 4.5e-100 369.4 400 50.0
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 4.5e-100 369.4 395 48.9
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 5.9e-100 369.0 401 47.4
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 7.7e-100 368.6 403 49.4
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 7.7e-100 368.6 396 49.7
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 1.3e-99 367.9 403 49.6
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.8e-99 366.3 394 51.3
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.1e-98 364.8 397 48.6
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 1.1e-98 364.8 399 50.1
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 2.5e-98 363.6 397 48.1
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 6.1e-97 359.0 407 49.1
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 6.1e-97 359.0 397 49.6
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 7.9e-97 358.6 400 47.8
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.0e-96 358.2 389 49.6
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 2.3e-96 357.1 398 49.0
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 2.3e-96 357.1 405 48.1
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 3.0e-96 356.7 404 48.5
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 3.9e-96 356.3 400 49.5
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 5.1e-96 355.9 400 49.5
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 5.1e-96 355.9 400 49.5
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 6.7e-96 355.5 398 48.7
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 8.8e-96 355.1 416 48.3
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 3.3e-95 353.2 400 48.8
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 1.1e-93 348.2 377 49.3
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 1.8e-93 347.4 400 49.2
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 1.8e-93 347.4 408 48.5
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 2.4e-93 347.1 381 48.0
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 9.1e-93 345.1 390 48.2
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 1.2e-92 344.7 407 45.7
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 3.4e-92 343.2 393 49.9
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 4.5e-92 342.8 416 47.8
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 7.7e-92 342.0 391 48.3
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 7.7e-92 342.0 393 49.6
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.0e-91 341.7 400 48.5
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.3e-91 341.3 392 48.2
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 1.3e-91 341.3 343 52.2
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 2.2e-91 340.5 405 48.6
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 2.9e-91 340.1 394 47.7
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 3.8e-91 339.7 403 47.6
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 8.5e-91 338.6 403 48.9
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 4.2e-90 336.3 401 47.6
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 4.2e-90 336.3 416 47.4
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 7.2e-90 335.5 399 49.4
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.6e-89 334.3 406 48.0
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 2.1e-89 334.0 396 45.2
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 2.1e-89 334.0 396 45.2
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 2.7e-89 333.6 390 45.6
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 4.7e-89 332.8 392 46.7
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 7.9e-89 332.0 400 46.0
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 3.0e-88 330.1 402 46.3
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 3.9e-88 329.7 345 50.4
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 4.4e-87 326.2 330 52.1
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 5.7e-87 325.9 307 55.0
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 5.7e-87 325.9 390 47.2
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 7.4e-87 325.5 434 43.3
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.7e-86 323.2 393 47.6
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 6.3e-86 322.4 404 44.8
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-85 321.6 391 47.8
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 1.4e-85 321.2 483 40.8
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.1e-85 319.7 391 47.3
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 2.0e-84 317.4 394 46.2
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 2.0e-84 317.4 403 43.9
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 7.7e-84 315.5 398 44.7
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 6.5e-83 312.4 405 44.4
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 4.2e-82 309.7 391 48.1
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.2e-81 308.1 434 43.1
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 1.6e-81 307.8 383 44.9
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 2.7e-81 307.0 401 45.4
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.7e-81 306.2 403 44.7
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 2.0e-79 300.8 398 44.0
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 4.8e-78 296.2 398 45.0
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 3.1e-77 293.5 394 41.9
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 2.0e-76 290.8 409 43.5
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 3.8e-75 286.6 385 42.3
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 5.0e-75 286.2 280 54.3
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 6.5e-75 285.8 329 47.1
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 3.2e-74 283.5 391 41.9
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.5e-71 274.6 333 46.8
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 2.4e-69 267.3 330 44.5
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 5.9e-68 262.7 248 52.8
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 5.0e-67 259.6 260 52.7
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 4.2e-66 256.5 323 46.7
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 1.0e-64 251.9 458 37.8
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.2e-64 249.6 272 51.5
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 5.2e-64 249.6 412 38.3
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 3.7e-62 243.4 293 48.8
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.8e-61 241.1 408 39.2
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 7.0e-61 239.2 210 54.8
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 6.6e-59 232.6 315 41.3
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 2.6e-55 220.7 407 36.9
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.1e-49 201.1 398 35.2
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 4.7e-49 199.9 412 33.7
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.1e-48 197.2 419 33.2
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 7.5e-47 192.6 179 53.1
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 2.2e-46 191.0 260 41.5
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.1e-45 188.7 419 33.4
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 5.2e-40 169.9 236 44.1
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.5e-39 168.3 252 41.3
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 3.7e-38 163.7 468 28.0
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 8.3e-38 162.5 221 43.0
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 9.2e-37 159.1 225 44.4
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 5.1e-35 153.3 257 40.1
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 5.1e-35 153.3 257 40.1
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 5.6e-34 149.8 253 38.7
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 3.6e-33 147.1 145 48.3
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 5.2e-32 143.3 429 29.8
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 2.0e-31 141.4 184 42.9
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 3.4e-31 140.6 202 44.1
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 1.9e-29 134.8 114 58.8
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 2.4e-29 134.4 202 42.1
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 1.0e-27 129.0 242 35.5
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 6.6e-27 126.3 215 36.7
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 4.7e-25 120.2 103 53.4
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 6.2e-25 119.8 160 45.0
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 2.1e-20 104.8 155 38.7
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 6.6e-19 99.8 157 35.7
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 8.7e-19 99.4 136 39.7
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 8.1e-17 92.8 104 48.1
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 4.9e-14 83.6 66 60.6
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 4.2e-13 80.5 80 50.0
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 2.1e-12 78.2 122 39.3
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 7.9e-12 76.3 133 36.8
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 7.9e-12 76.3 167 33.5
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 1.3e-11 75.5 95 44.2
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.3e-11 75.5 108 35.2
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 6.9e-08 63.2 103 36.9
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 2.0e-07 61.6 87 41.4
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 2.2e-06 58.2 52 50.0


User provided reference genes

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