Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 6.2e-103 377.5 193 100.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 6.9e-78 294.3 202 78.7
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 7.7e-77 290.8 200 79.0
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.3e-76 290.0 195 80.5
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 8.8e-73 277.3 206 73.3
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.5e-72 276.6 197 75.1
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.3e-72 275.4 201 74.1
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.7e-71 273.1 203 74.9
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 2.2e-71 272.7 201 71.6
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 2.8e-71 272.3 201 72.6
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 2.8e-71 272.3 201 72.6
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 3.7e-71 271.9 200 73.5
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 1.1e-70 270.4 201 72.1
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.4e-70 270.0 201 73.6
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 1.8e-70 269.6 202 71.8
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.4e-70 269.2 199 73.9
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.4e-70 269.2 200 73.0
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.4e-70 269.2 199 73.9
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 4.1e-70 268.5 202 74.3
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.2e-69 266.9 205 71.7
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.0e-69 266.2 206 70.9
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 2.6e-69 265.8 201 70.6
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.4e-69 265.4 201 69.7
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 5.9e-69 264.6 206 69.9
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 7.7e-69 264.2 219 68.5
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 7.7e-69 264.2 200 72.0
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 7.7e-69 264.2 199 71.9
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.0e-68 263.8 194 71.1
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.7e-68 263.1 202 69.8
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.7e-68 263.1 203 71.9
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 2.2e-68 262.7 207 68.6
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 5.0e-68 261.5 200 69.5
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 8.5e-68 260.8 199 70.9
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.4e-67 260.0 201 69.7
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.9e-67 259.6 204 70.1
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.5e-67 259.2 204 68.6
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.5e-67 259.2 199 70.9
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 7.2e-67 257.7 200 71.0
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.2e-67 257.7 200 70.5
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 7.2e-67 257.7 202 73.3
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 7.2e-67 257.7 201 69.2
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 9.4e-67 257.3 203 70.0
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.2e-66 256.9 202 72.8
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.6e-66 255.4 202 68.8
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 3.6e-66 255.4 193 72.0
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 3.6e-66 255.4 201 69.2
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 4.7e-66 255.0 198 69.7
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 7.9e-66 254.2 200 68.5
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.0e-65 253.8 209 70.3
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.3e-65 252.7 185 70.3
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 2.0e-64 249.6 201 69.7
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 4.4e-64 248.4 176 76.1
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 4.4e-64 248.4 176 76.1
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 7.4e-64 247.7 202 67.3
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 9.7e-64 247.3 204 68.6
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.3e-63 246.9 200 67.5
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.8e-62 243.0 235 60.4
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 3.1e-62 242.3 201 66.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 3.1e-62 242.3 142 85.9
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.7e-60 236.5 204 63.7
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.7e-60 236.5 147 82.3
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 6.5e-60 234.6 176 69.9
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 6.5e-60 234.6 198 65.7
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 6.5e-60 234.6 247 55.9
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.1e-59 233.8 176 69.3
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-59 233.0 197 68.5
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 2.5e-59 232.6 195 67.2
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-59 232.6 196 68.4
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-59 232.6 196 68.4
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.2e-59 232.3 142 82.4
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 5.5e-59 231.5 146 81.5
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 5.5e-59 231.5 144 82.6
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 7.2e-59 231.1 203 62.6
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 9.4e-59 230.7 173 69.9
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.6e-58 229.9 204 64.7
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.6e-58 229.9 186 64.5
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-58 229.9 197 67.5
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 2.7e-58 229.2 170 69.4
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.7e-58 229.2 194 63.9
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 8.0e-58 227.6 206 62.6
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 5.2e-57 224.9 144 79.9
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 5.2e-57 224.9 206 61.7
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.1e-56 223.8 147 79.6
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.5e-56 223.4 202 62.9
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.0e-56 223.0 144 77.8
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 4.4e-56 221.9 213 63.4
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 4.4e-56 221.9 213 63.4
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 5.7e-56 221.5 160 70.6
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 7.4e-56 221.1 173 68.8
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 7.4e-56 221.1 144 76.4
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 9.7e-56 220.7 171 68.4
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 9.7e-56 220.7 143 76.2
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 9.7e-56 220.7 143 75.5
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 9.7e-56 220.7 143 81.1
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.3e-55 220.3 144 77.1
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 2.2e-55 219.5 168 69.0
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 2.8e-55 219.2 144 75.0
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 3.7e-55 218.8 142 80.3
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 3.7e-55 218.8 169 69.8
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 3.7e-55 218.8 169 69.8
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 3.7e-55 218.8 212 59.9
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 4.8e-55 218.4 145 77.9
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 6.3e-55 218.0 144 77.1
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 8.2e-55 217.6 145 77.2
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.1e-54 217.2 144 77.8
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.4e-54 216.9 211 56.9
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.8e-54 216.5 241 56.0
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 4.1e-54 215.3 146 75.3
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 9.1e-54 214.2 175 64.6
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.2e-53 213.8 156 71.2
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 2.6e-53 212.6 213 61.5
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 3.5e-53 212.2 151 69.5
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 3.5e-53 212.2 172 65.1
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.5e-53 212.2 162 69.1
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.5e-53 211.8 200 59.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 7.7e-53 211.1 178 62.9
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 7.7e-53 211.1 210 58.1
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.7e-52 209.9 175 63.4
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.7e-52 209.9 146 75.3
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 3.8e-52 208.8 184 62.5
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 5.0e-52 208.4 144 72.2
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.5e-52 208.0 143 69.9
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.1e-51 207.2 152 71.1
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.9e-51 206.5 159 66.7
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 1.9e-51 206.5 141 72.3
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 3.2e-51 205.7 201 58.2
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 4.2e-51 205.3 215 55.8
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 7.2e-51 204.5 182 60.4
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 7.2e-51 204.5 141 74.5
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.2e-50 203.8 121 84.3
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.7e-50 202.6 189 62.4
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 6.1e-50 201.4 137 75.2
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 8.0e-50 201.1 178 62.4
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 5.2e-49 198.4 150 66.7
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.3e-47 193.7 122 79.5
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.4e-46 190.3 157 66.2
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 5.3e-46 188.3 160 60.6
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 9.1e-46 187.6 225 53.3
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.9e-45 184.9 142 62.0
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.7e-44 183.3 139 69.8
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.2e-44 183.0 156 64.1
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.9e-44 182.6 200 56.0
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 4.2e-43 178.7 158 61.4
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.0e-42 174.5 144 61.8
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-40 170.6 145 65.5
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-39 166.8 105 81.0
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 3.5e-37 159.1 112 72.3
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 4.5e-37 158.7 106 76.4
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.3e-31 140.6 92 80.4
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 2.2e-31 139.8 81 84.0
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 4.9e-31 138.7 90 81.1
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 7.8e-29 131.3 130 58.5
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 4.3e-27 125.6 135 54.8
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 4.3e-27 125.6 169 50.9
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.0e-20 104.4 79 67.1
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 5.0e-20 102.1 96 54.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 8.1e-18 94.7 152 36.8
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 8.9e-17 91.3 157 35.0
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 2.4e-14 83.2 77 59.7
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.5e-11 73.9 81 53.1
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 7.3e-11 71.6 137 36.5
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 2.6e-08 63.2 37 75.7
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.7e-07 60.5 47 57.4
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 2.9e-07 59.7 37 83.8
TAR623G1727 Trochodendron aralioides HOM05D004280 ORTHO05D005059 9.2e-06 54.7 55 56.4


User provided reference genes

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