Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0001000 Simmondsia chinensis HOM05D007158 ORTHO05D007424 3.7e-107 391.7 222 100.0
Ah.10g037870 Amaranthus hybridus HOM05D007158 ORTHO05D007424 6.0e-41 171.8 144 64.6
AUR62023262 Chenopodium quinoa HOM05D007158 ORTHO05D007424 7.3e-39 164.9 142 62.7
Hund13698 Selenicereus undatus HOM05D007158 ORTHO05D007424 3.6e-38 162.5 219 52.1
GSVIVG01030945001 Vitis vinifera HOM05D007158 ORTHO05D007424 1.7e-32 143.7 154 57.8
TAR629G2388 Trochodendron aralioides HOM05D007158 ORTHO05D007424 3.0e-32 142.9 168 54.8
Actinidia17647 Actinidia chinensis HOM05D007158 ORTHO05D007424 8.6e-32 141.4 151 60.3
Cfa007880 Carpinus fangiana HOM05D007158 ORTHO05D007424 1.1e-31 141.0 209 50.2
DCAR_025891 Daucus carota HOM05D007158 ORTHO05D007424 1.9e-31 140.2 208 51.9
HanXRQChr09g0262471 Helianthus annuus HOM05D007158 ORTHO05D007424 5.6e-31 138.7 156 53.8
TAR374G0148 Trochodendron aralioides HOM05D007158 ORTHO05D007424 9.5e-31 137.9 155 58.7
ECA232G0903 Erigeron canadensis HOM05D007158 ORTHO05D007424 1.6e-30 137.1 208 48.6
Nn4g24036 Nelumbo nucifera HOM05D007158 ORTHO05D007424 4.7e-30 135.6 144 55.6
Aqoxy3G00164 Aquilegia oxysepala HOM05D007158 ORTHO05D007424 1.1e-29 134.4 151 55.6
EL10Ac2g04517 Beta vulgaris HOM05D007158 ORTHO05D007424 1.4e-29 134.0 150 54.7
QL02p049322 Quercus lobata HOM05D007158 ORTHO05D007424 1.8e-29 133.7 209 51.7
PGR004G0702 Punica granatum HOM05D007158 ORTHO05D007424 2.3e-29 133.3 211 46.0
CDE04G0479 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 4.0e-29 132.5 218 42.2
Ciclev10012598m.g Citrus clementina HOM05D007158 ORTHO05D007424 2.0e-28 130.2 208 42.3
Potri.017G121000 Populus trichocarpa HOM05D007158 ORTHO05D007424 7.6e-28 128.3 214 46.7
Dinv14854 Davidia involucrata HOM05D007158 ORTHO05D007424 1.7e-27 127.1 187 51.9
HPP92_023114 Vanilla planifolia HOM05D007158 ORTHO05D007424 3.8e-27 125.9 147 53.1
Os01g0505700 Oryza sativa ssp. japonica HOM05D007158 ORTHO05D007424 4.9e-27 125.6 146 51.4
Lj4A182G65 Lonicera japonica HOM05D007158 ORTHO05D007424 1.1e-26 124.4 150 50.7
Eucgr.F02798 Eucalyptus grandis HOM05D007158 ORTHO05D007424 3.2e-26 122.9 213 44.6
Sabra17G0103400 Salix brachista HOM05D007158 ORTHO05D007424 5.4e-26 122.1 215 43.7
CDE06G2846 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 1.6e-25 120.6 162 48.8
Thecc.04G126100 Theobroma cacao HOM05D007158 ORTHO05D007424 1.6e-25 120.6 150 50.7
Rhsim08G0084200 Rhododendron simsii HOM05D007158 ORTHO05D007424 2.1e-25 120.2 189 45.5
Glyma.02G090200 Glycine max HOM05D007158 ORTHO05D007424 4.6e-25 119.0 204 41.7
RcHm_v2.0_Chr1g0332591 Rosa chinensis HOM05D007158 ORTHO05D007424 1.7e-24 117.1 210 44.3
PSO339G0418 Papaver somniferum HOM05D007158 ORTHO05D007424 3.0e-24 116.3 147 50.3
Dinv33973 Davidia involucrata HOM05D007158 ORTHO05D007424 3.9e-24 115.9 233 45.9
Zm00001eb300940 Zea mays HOM05D007158 ORTHO05D007424 3.9e-24 115.9 154 48.7
Atru.chr1.1578 Acer truncatum HOM05D007158 ORTHO05D007424 5.1e-24 115.5 206 45.1
COL.COLO4_03615 Corchorus olitorius HOM05D007158 ORTHO05D007424 5.1e-24 115.5 152 48.7
Duzib133G0688 Durio zibethinus HOM05D007158 ORTHO05D007424 5.1e-24 115.5 208 45.7
Manes.01G113800 Manihot esculenta HOM05D007158 ORTHO05D007424 5.1e-24 115.5 209 45.0
Prupe.3G150100 Prunus persica HOM05D007158 ORTHO05D007424 6.6e-24 115.2 212 47.6
Duzib138G0519 Durio zibethinus HOM05D007158 ORTHO05D007424 8.6e-24 114.8 210 44.8
arahy.Tifrunner.gnm1.ann1.896A9W Arachis hypogaea HOM05D007158 ORTHO05D007424 1.1e-23 114.4 131 52.7
MD09G1258200 Malus domestica HOM05D007158 ORTHO05D007424 1.1e-23 114.4 215 48.4
Phvul.008G009100 Phaseolus vulgaris HOM05D007158 ORTHO05D007424 1.1e-23 114.4 204 42.2
CANSAT78G1746 Cannabis sativa HOM05D007158 ORTHO05D007424 1.5e-23 114.0 189 50.3
ClCG07G016450 Citrullus lanatus HOM05D007158 ORTHO05D007424 1.9e-23 113.6 198 41.9
MELO3C010379.2 Cucumis melo HOM05D007158 ORTHO05D007424 1.9e-23 113.6 197 41.6
Lsat_1_v5_gn_4_156301 Lactuca sativa HOM05D007158 ORTHO05D007424 2.5e-23 113.2 209 46.9
CsaV3_4G010370 Cucumis sativus L. HOM05D007158 ORTHO05D007424 3.3e-23 112.8 198 41.9
Gohir.D11G167600 Gossypium hirsutum HOM05D007158 ORTHO05D007424 4.3e-23 112.5 210 44.3
Gorai.007G178700 Gossypium raimondii HOM05D007158 ORTHO05D007424 4.3e-23 112.5 210 44.3
Potri.004G094500 Populus trichocarpa HOM05D007158 ORTHO05D007424 4.3e-23 112.5 216 43.1
Nitab4.5_0000036g0590 Nicotiana tabacum HOM05D007158 ORTHO05D007424 9.6e-23 111.3 207 45.4
Cc07_g08430 Coffea canephora HOM05D007158 ORTHO05D007424 1.2e-22 110.9 198 43.4
MSTRG.2781 Avicennia marina HOM05D007158 ORTHO05D007424 2.1e-22 110.2 143 48.3
Glyma.18G293000 Glycine max HOM05D007158 ORTHO05D007424 2.1e-22 110.2 204 43.6
Gohir.A11G161300 Gossypium hirsutum HOM05D007158 ORTHO05D007424 2.1e-22 110.2 210 43.8
VMungo1383G1080 Vigna mungo HOM05D007158 ORTHO05D007424 2.8e-22 109.8 204 40.7
ATR0743G078 Amborella trichopoda HOM05D007158 ORTHO05D007424 4.7e-22 109.0 207 41.1
Solyc02g063280.4 Solanum lycopersicum HOM05D007158 ORTHO05D007424 4.7e-22 109.0 146 48.6
Haze_14197 Corylus avellana HOM05D007158 ORTHO05D007424 6.2e-22 108.6 127 53.5
Medtr7g082850 Medicago truncatula HOM05D007158 ORTHO05D007424 6.2e-22 108.6 196 38.8
Lj1g0013464 Lotus japonicus HOM05D007158 ORTHO05D007424 8.1e-22 108.2 139 48.2
TWI74G0884 Tripterygium wilfordii HOM05D007158 ORTHO05D007424 8.1e-22 108.2 211 46.4
Migut.H00250 Erythranthe guttata HOM05D007158 ORTHO05D007424 1.1e-21 107.8 207 38.6
Lalb_Chr10g0091481 Lupinus albus HOM05D007158 ORTHO05D007424 1.1e-21 107.8 189 40.2
Peaxi162Scf00343g00058 Petunia axillaris HOM05D007158 ORTHO05D007424 1.1e-21 107.8 149 47.7
Psat3g097040 Pisum sativum HOM05D007158 ORTHO05D007424 1.1e-21 107.8 189 38.1
arahy.Tifrunner.gnm1.ann1.5M3IQK Arachis hypogaea HOM05D007158 ORTHO05D007424 3.1e-21 106.3 189 46.6
FAN10G2330 Fragaria x ananassa HOM05D007158 ORTHO05D007424 3.1e-21 106.3 152 48.7
FvH4_7g05720 Fragaria vesca HOM05D007158 ORTHO05D007424 5.2e-21 105.5 213 40.4
FAN01G1160 Fragaria x ananassa HOM05D007158 ORTHO05D007424 5.2e-21 105.5 213 40.4
Oeu047435.1 Olea europaea HOM05D007158 ORTHO05D007424 5.2e-21 105.5 163 44.8
PSO384G2845 Papaver somniferum HOM05D007158 ORTHO05D007424 5.2e-21 105.5 77 70.1
Sopen02g014350 Solanum pennellii HOM05D007158 ORTHO05D007424 5.2e-21 105.5 142 48.6
Nitab4.5_0002644g0050 Nicotiana tabacum HOM05D007158 ORTHO05D007424 6.9e-21 105.1 147 46.9
SGA_v2.0_scaffold202G41480 Striga asiatica HOM05D007158 ORTHO05D007424 8.9e-21 104.8 147 46.3
CAN.G225.14 Capsicum annuum HOM05D007158 ORTHO05D007424 1.5e-20 104.0 201 41.8
FAN23G0239 Fragaria x ananassa HOM05D007158 ORTHO05D007424 1.5e-20 104.0 151 48.3
PGSC0003DMG400010413 Solanum tuberosum HOM05D007158 ORTHO05D007424 1.5e-20 104.0 209 43.5
Rhsim10G0076900 Rhododendron simsii HOM05D007158 ORTHO05D007424 2.6e-20 103.2 151 46.4
CiPaw.04G044500 Carya illinoinensis HOM05D007158 ORTHO05D007424 4.4e-20 102.4 204 44.1
Cpa.g.sc170.15 Carica papaya HOM05D007158 ORTHO05D007424 1.7e-19 100.5 150 43.3
Hma1.2p1_0500F.1_g167110 Hydrangea macrophylla HOM05D007158 ORTHO05D007424 6.4e-19 98.6 198 42.4
TPR.G28397 Trifolium pratense HOM05D007158 ORTHO05D007424 6.4e-19 98.6 200 37.5
FAN03G1259 Fragaria x ananassa HOM05D007158 ORTHO05D007424 3.2e-18 96.3 93 59.1
Ca_08098_v3 Cicer arietinum L. HOM05D007158 ORTHO05D007424 7.1e-18 95.1 196 36.2
FAN04G1654 Fragaria x ananassa HOM05D007158 ORTHO05D007424 3.5e-17 92.8 93 58.1
Sabra04G0063800 Salix brachista HOM05D007158 ORTHO05D007424 3.5e-17 92.8 192 42.7
vmacro18064 Vaccinium macrocarpon HOM05D007158 ORTHO05D007424 3.5e-17 92.8 209 46.4
SMO119G0024 Selaginella moellendorffii HOM05D007158 ORTHO05D007424 6.6e-16 88.6 77 57.1
Sed0005493 Sechium edule HOM05D007158 ORTHO05D007424 5.6e-15 85.5 167 41.3
Rhsim10G0074300 Rhododendron simsii HOM05D007158 ORTHO05D007424 2.8e-14 83.2 153 41.8
SHI25695 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-14 82.4 121 40.5
Sabra17G0100100 Salix brachista HOM05D007158 ORTHO05D007424 1.1e-13 81.3 195 38.5
CBR_g32195 Chara braunii HOM05D007158 ORTHO05D007424 4.0e-13 79.3 74 52.7
Mapoly0099s0058 Marchantia polymorpha HOM05D007158 ORTHO05D007424 5.8e-12 75.5 163 34.4
Pp3c14_9040 Physcomitrium patens HOM05D007158 ORTHO05D007424 5.8e-12 75.5 107 41.1
Oeu061824.1 Olea europaea HOM05D007158 ORTHO05D007424 8.4e-11 71.6 167 35.9
AagrBONN_evm.TU.Sc2ySwM_117.711 Anthoceros agrestis HOM05D007158 ORTHO05D007424 1.4e-10 70.9 177 34.5
AT1G60640 Arabidopsis thaliana HOM05D007158 ORTHO05D007424 3.9e-08 62.8 78 37.2
CARHR052290 Cardamine hirsuta HOM05D007158 ORTHO05D007424 3.9e-08 62.8 52 50.0
Thhalv10023615m.g Eutrema salsugineum HOM05D011338 ORTHO05D007424 3.9e-08 62.8 63 47.6
A01p29410 Brassica napus HOM05D011338 ORTHO05D007424 6.7e-08 62.0 78 35.9
AL2G15950 Arabidopsis lyrata HOM05D011338 ORTHO05D007424 2.5e-07 60.1 78 35.9
Sp2g04080 Schrenkiella parvula HOM05D011338 ORTHO05D007424 2.5e-07 60.1 78 38.5
Carub.0002s0469 Capsella rubella HOM05D007158 ORTHO05D007424 3.3e-07 59.7 78 35.9
BcaC09g49385 Brassica carinata HOM05D011338 ORTHO05D007424 4.3e-07 59.3 63 42.9
C01p37190 Brassica napus HOM05D011338 ORTHO05D007424 4.3e-07 59.3 63 42.9
BraA01t03075Z Brassica rapa HOM05D011338 ORTHO05D007424 4.3e-07 59.3 78 37.2
BolC1t03688H Brassica oleracea HOM05D011338 ORTHO05D007424 5.6e-07 58.9 63 42.9
THA.LOC104809979 Tarenaya hassleriana HOM05D007158 ORTHO05D007424 5.6e-07 58.9 202 28.7
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 1.6e-06 57.4 48 66.7
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 3.6e-06 56.2 47 68.1
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 3.6e-06 56.2 47 68.1
C04p25850 Brassica napus HOM05D011338 ORTHO05D007424 4.8e-06 55.8 45 51.1
BolC4t24223H Brassica oleracea HOM05D011338 ORTHO05D007424 4.8e-06 55.8 45 51.1
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 6.2e-06 55.5 48 64.6
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 6.2e-06 55.5 48 64.6


User provided reference genes

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