Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0000830 Simmondsia chinensis HOM05D002996 ORTHO05D003536 3.3e-135 485.0 228 100.0
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 6.8e-117 424.1 224 88.4
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 3.2e-114 415.2 224 84.4
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 5.4e-114 414.5 224 84.8
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 3.5e-113 411.8 224 84.8
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 6.6e-112 407.5 224 83.9
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 2.5e-111 405.6 218 82.6
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 5.6e-111 404.4 218 82.6
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.3e-110 403.3 220 81.8
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 1.6e-110 402.9 216 82.4
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 1.6e-110 402.9 216 82.4
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 1.6e-110 402.9 216 82.9
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 2.8e-110 402.1 220 83.2
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 4.8e-110 401.4 219 81.7
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.4e-109 399.8 219 81.7
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 1.4e-109 399.8 219 82.6
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.4e-109 399.8 219 81.3
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.8e-109 399.4 218 82.1
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 1.8e-109 399.4 218 82.1
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.4e-109 399.1 220 81.4
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 2.4e-109 399.1 219 84.0
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 3.1e-109 398.7 221 80.5
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 3.1e-109 398.7 219 81.7
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 4.0e-109 398.3 220 80.9
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 4.0e-109 398.3 219 82.2
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 6.9e-109 397.5 219 80.4
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 6.9e-109 397.5 220 80.9
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 6.9e-109 397.5 219 80.4
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 1.2e-108 396.7 220 80.5
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 1.2e-108 396.7 220 80.5
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.2e-108 396.7 219 81.3
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 1.2e-108 396.7 219 80.4
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.2e-108 396.7 219 81.3
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 1.5e-108 396.4 219 81.3
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 1.5e-108 396.4 216 81.9
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 2.0e-108 396.0 220 80.9
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 2.0e-108 396.0 222 79.3
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 3.4e-108 395.2 218 80.7
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 4.4e-108 394.8 219 79.5
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 4.4e-108 394.8 224 79.5
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 5.8e-108 394.4 219 80.4
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 5.8e-108 394.4 220 80.9
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 7.6e-108 394.0 223 79.8
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 9.9e-108 393.7 219 80.4
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.7e-107 392.9 224 79.5
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 2.9e-107 392.1 218 81.2
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 2.9e-107 392.1 218 79.4
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 2.9e-107 392.1 224 79.0
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 3.8e-107 391.7 224 79.9
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 3.8e-107 391.7 220 79.5
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 6.4e-107 391.0 218 80.7
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 6.4e-107 391.0 241 74.7
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.1e-106 390.2 220 79.5
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 1.1e-106 390.2 219 78.5
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.4e-106 389.8 219 79.9
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 1.9e-106 389.4 221 79.6
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 4.2e-106 388.3 219 78.1
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 5.4e-106 387.9 219 80.8
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 5.4e-106 387.9 219 78.1
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.4e-106 387.9 219 79.5
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 5.4e-106 387.9 219 79.5
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 7.1e-106 387.5 220 78.2
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 9.3e-106 387.1 219 78.5
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 1.6e-105 386.3 224 78.6
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.6e-105 386.3 220 78.6
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.1e-105 386.0 224 78.1
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.1e-105 386.0 220 77.7
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 2.7e-105 385.6 219 78.1
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 2.7e-105 385.6 224 78.1
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 3.5e-105 385.2 221 76.9
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 4.6e-105 384.8 220 77.7
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 6.0e-105 384.4 232 76.7
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 6.0e-105 384.4 224 77.2
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.0e-104 383.6 220 77.7
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 1.3e-104 383.3 224 76.8
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 2.3e-104 382.5 218 78.9
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 2.3e-104 382.5 219 77.2
PGSC0003DMG401030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 1.1e-103 380.2 210 80.5
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.5e-103 379.8 218 79.4
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 2.5e-103 379.0 262 68.7
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 2.5e-103 379.0 223 75.8
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 2.5e-103 379.0 224 75.9
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 3.3e-103 378.6 219 76.3
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 4.3e-103 378.3 218 78.0
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 9.6e-103 377.1 218 77.5
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 1.3e-102 376.7 218 78.0
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 1.6e-102 376.3 218 77.5
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 2.1e-102 375.9 223 75.3
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 2.8e-102 375.6 218 77.5
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 3.6e-102 375.2 218 77.5
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 4.8e-102 374.8 220 76.4
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 6.2e-102 374.4 218 77.5
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 8.1e-102 374.0 220 76.8
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.4e-101 373.2 219 74.4
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.8e-101 372.9 218 77.1
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 1.8e-101 372.9 224 75.4
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 3.1e-101 372.1 223 73.5
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 6.9e-101 370.9 218 76.6
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 6.9e-101 370.9 218 76.6
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 6.9e-101 370.9 218 76.6
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 6.9e-101 370.9 218 76.6
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.5e-100 369.8 219 77.2
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 2.0e-100 369.4 218 77.1
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 2.0e-100 369.4 219 74.9
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 2.6e-100 369.0 218 76.1
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 2.6e-100 369.0 218 76.1
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 2.6e-100 369.0 220 74.1
SEGI_30841 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 2.6e-100 369.0 220 75.0
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 7.6e-100 367.5 218 75.7
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 7.6e-100 367.5 218 75.7
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 1.3e-99 366.7 218 75.7
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 1.3e-99 366.7 218 75.7
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 1.3e-99 366.7 218 75.7
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.4e-98 363.2 218 74.8
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.9e-98 362.8 219 73.5
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 7.1e-98 360.9 220 75.0
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 3.5e-97 358.6 218 75.2
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 5.1e-96 354.8 216 72.7
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 2.8e-94 349.0 219 72.6
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 3.1e-93 345.5 219 71.7
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 5.3e-93 344.7 202 76.2
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 9.0e-93 344.0 219 70.3
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 2.6e-92 342.4 218 70.2
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.4e-92 342.0 191 81.7
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 7.6e-92 340.9 219 69.9
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 1.0e-91 340.5 216 71.8
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.5e-90 335.9 220 69.1
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 3.9e-88 328.6 220 66.4
Actinidia17657 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.1e-87 327.0 212 70.8
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.1e-86 322.8 220 67.7
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.8e-86 322.4 219 65.3
vmacro05505 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.7e-86 322.0 196 75.0
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 5.3e-85 318.2 221 67.4
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 1.7e-83 313.2 221 67.4
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 7.4e-79 297.7 167 82.6
CAN.G473.24 Capsicum annuum HOM05D002996 ORTHO05D003536 9.0e-77 290.8 210 66.2
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.1e-74 283.9 219 62.6
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 3.2e-74 282.3 223 62.3
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 4.6e-73 278.5 165 78.2
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 2.3e-72 276.2 145 82.8
Dinv19012 Davidia involucrata HOM05D002996 ORTHO05D003536 1.7e-62 243.4 133 81.2
CsaV3_1G027810 Cucumis sativus L. HOM05D002996 ORTHO05D003536 6.3e-62 241.5 149 73.8
HPP92_003793 Vanilla planifolia HOM05D002996 ORTHO05D003536 2.2e-59 233.0 126 79.4
Ca_17110_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.5e-55 220.3 129 80.6
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 2.2e-54 216.5 121 82.6
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 2.2e-54 216.5 268 42.2
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 7.0e-45 184.9 221 42.5
CSS0034868 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.6e-41 172.6 91 84.6
Lsat_1_v5_gn_2_24061 Lactuca sativa HOM05D002996 ORTHO05D003536 6.1e-41 171.8 116 69.0
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 6.1e-33 145.2 93 73.1
CDE10G1183 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.2e-31 141.0 93 71.0
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 4.1e-29 132.5 79 77.2
Dinv19013 Davidia involucrata HOM05D002996 ORTHO05D000378 6.0e-20 102.1 56 75.0
CSS0000944 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 8.6e-19 98.2 59 69.5
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.2e-17 94.4 212 29.7
Gohir.D11G201533 Gossypium hirsutum HOM05D002702 ORTHO05D022789 2.3e-08 63.5 40 72.5
Hma1.2p1_0021F.1_g014340 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 2.3e-08 63.5 30 90.0
Gorai.007G216000 Gossypium raimondii HOM05D002702 ORTHO05D003416 1.2e-07 61.2 40 67.5
CSS0001283 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.4e-07 59.7 59 49.2


User provided reference genes

Program Settings