Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0000400 Simmondsia chinensis HOM05D004783 ORTHO05D005581 4.5e-283 977.6 643 100.0
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 2.8e-184 649.4 642 70.6
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 1.5e-182 643.7 643 69.2
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 1.5e-182 643.7 643 69.2
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 2.2e-181 639.8 643 70.5
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 5.0e-181 638.6 643 69.1
Actinidia24491 Actinidia chinensis HOM05D004783 ORTHO05D005581 2.1e-179 633.3 644 69.7
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 1.1e-177 627.5 643 64.5
Prupe.8G057300 Prunus persica HOM05D004783 ORTHO05D005581 5.7e-177 625.2 643 68.1
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 3.7e-176 622.5 644 63.8
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 5.3e-175 618.6 639 68.7
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 1.3e-173 614.0 641 62.7
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 2.9e-173 612.8 643 67.0
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 6.5e-173 611.7 643 67.5
AUR62009429 Chenopodium quinoa HOM05D004783 ORTHO05D005581 1.5e-169 600.5 643 65.3
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 1.0e-165 587.8 622 66.9
Rhsim01G0260800 Rhododendron simsii HOM05D004783 ORTHO05D005581 1.6e-163 580.5 642 66.7
Thecc.04G015500 Theobroma cacao HOM05D004783 ORTHO05D005581 3.6e-163 579.3 643 65.6
TAR622G0302 Trochodendron aralioides HOM05D004783 ORTHO05D005581 3.8e-157 559.3 645 68.4
TAR622G0815 Trochodendron aralioides HOM05D004783 ORTHO05D005581 3.8e-157 559.3 645 68.4
MD05G1041400 Malus domestica HOM05D004783 ORTHO05D005581 6.6e-157 558.5 638 66.0
Cpa.g.c26548.5 Carica papaya HOM05D004783 ORTHO05D005581 1.9e-156 557.0 639 64.8
RcHm_v2.0_Chr5g0055041 Rosa chinensis HOM05D004783 ORTHO05D005581 3.3e-156 556.2 644 59.9
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 5.6e-156 555.4 643 56.3
Nitab4.5_0003308g0060 Nicotiana tabacum HOM05D004783 ORTHO05D005581 1.6e-155 553.9 643 52.9
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 1.4e-154 550.8 643 52.6
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 1.4e-154 550.8 634 56.5
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 5.2e-154 548.9 643 52.7
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 5.7e-153 545.4 643 52.3
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 1.1e-151 541.2 647 45.1
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 1.2e-150 537.7 642 63.6
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 2.0e-150 537.0 643 44.8
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 1.1e-148 531.2 636 54.2
Ciclev10024609m.g Citrus clementina HOM05D004783 ORTHO05D005581 2.8e-147 526.6 631 60.5
COL.COLO4_29903 Corchorus olitorius HOM05D004783 ORTHO05D005581 6.2e-147 525.4 643 57.9
Migut.L01576 Erythranthe guttata HOM05D004783 ORTHO05D005581 4.4e-145 519.2 645 62.2
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.7e-144 517.3 643 42.3
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 1.4e-143 514.2 644 44.9
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 3.0e-141 506.5 629 58.8
CsaV3_2G007350 Cucumis sativus L. HOM05D004783 ORTHO05D005581 7.3e-140 501.9 642 57.5
FAN16G2696 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.8e-139 500.0 631 61.0
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 4.7e-139 499.2 640 60.6
FvH4_3g29690 Fragaria vesca HOM05D004783 ORTHO05D005581 6.2e-139 498.8 644 59.2
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 4.4e-137 492.7 649 41.8
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 7.5e-137 491.9 648 41.5
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 7.5e-137 491.9 644 62.1
MD10G1047800 Malus domestica HOM05D004783 ORTHO05D005581 6.4e-136 488.8 638 57.5
Potri.004G229100 Populus trichocarpa HOM05D004783 ORTHO05D005581 2.4e-135 486.9 649 53.6
Sabra01G0174200 Salix brachista HOM05D004783 ORTHO05D005581 9.2e-135 485.0 652 52.5
Sed0014805 Sechium edule HOM05D004783 ORTHO05D005581 2.3e-133 480.3 643 59.9
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 4.3e-132 476.1 627 47.2
Migut.J00915 Erythranthe guttata HOM05D004783 ORTHO05D005581 2.3e-130 470.3 645 59.7
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 8.9e-130 468.4 651 40.7
Gohir.A05G337100 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.2e-129 468.0 643 38.4
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 3.4e-129 466.5 641 39.9
Atru.BG.182.p Acer truncatum HOM05D004783 ORTHO05D005581 2.4e-127 460.3 591 55.0
Gorai.012G085500 Gossypium raimondii HOM05D004783 ORTHO05D005581 4.1e-127 459.5 638 37.8
Gohir.D04G075700 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.2e-126 458.0 638 37.6
FAN25G1477 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.6e-126 457.6 631 58.6
Lalb_Chr04g0249471 Lupinus albus HOM05D004783 ORTHO05D005581 2.7e-126 456.8 639 52.0
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 3.3e-124 449.9 643 55.7
Cc06_g12410 Coffea canephora HOM05D004783 ORTHO05D005581 2.8e-123 446.8 649 58.7
FAN11G1373 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.1e-122 443.4 631 57.4
FAN15G2228 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.1e-122 443.4 631 54.7
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 7.6e-121 438.7 639 52.6
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 1.7e-120 437.6 643 49.8
Lj4g0006774 Lotus japonicus HOM05D004783 ORTHO05D005581 6.4e-120 435.6 644 52.0
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 1.4e-119 434.5 621 57.5
Gorai.003G087500 Gossypium raimondii HOM05D004783 ORTHO05D005581 3.2e-119 433.3 643 48.5
Gohir.D03G072203 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.7e-117 427.6 643 46.8
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 3.9e-117 426.4 637 42.4
Glyma.02G276200 Glycine max HOM05D004783 ORTHO05D005581 5.6e-116 422.5 630 54.1
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 5.6e-116 422.5 636 37.9
SGA_v2.0_scaffold21G09513 Striga asiatica HOM05D004783 ORTHO05D005581 5.6e-116 422.5 640 56.7
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 1.8e-114 417.5 633 46.9
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 3.1e-114 416.8 637 51.2
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.9e-111 407.5 598 58.4
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 2.4e-111 407.1 653 53.9
Manes.01G175200 Manihot esculenta HOM05D004783 ORTHO05D005581 3.5e-110 403.3 645 52.6
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 6.0e-110 402.5 632 38.6
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 6.0e-110 402.5 632 37.7
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 5.3e-106 389.4 638 50.0
Manes.02G133800 Manihot esculenta HOM05D004783 ORTHO05D005581 1.7e-104 384.4 636 52.8
THA.LOC104800219 Tarenaya hassleriana HOM05D004783 ORTHO05D005581 1.8e-101 374.4 629 33.9
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 3.0e-101 373.6 640 34.7
Carub.0002s1809 Capsella rubella HOM05D004783 ORTHO05D005581 4.3e-100 369.8 608 45.9
ECA234G4279 Erigeron canadensis HOM05D004783 ORTHO05D005581 9.6e-100 368.6 641 47.0
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 2.6e-97 360.5 608 42.8
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 3.4e-97 360.1 632 34.8
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 1.7e-96 357.8 638 41.7
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 4.2e-95 353.2 640 44.1
PSO198G0081 Papaver somniferum HOM05D004783 ORTHO05D005581 4.2e-95 353.2 637 34.1
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 1.0e-93 348.6 607 47.4
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 4.3e-92 343.2 607 42.0
SHI25070 Sapria himalayana HOM05D004783 ORTHO05D005581 8.2e-91 339.0 653 50.1
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 6.9e-90 335.9 608 47.9
Ca_06171_v3 Cicer arietinum L. HOM05D004783 ORTHO05D005581 1.7e-88 331.3 643 51.5
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 3.8e-88 330.1 647 42.8
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 5.5e-87 326.2 646 45.8
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 5.5e-87 326.2 607 42.0
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 3.9e-85 320.1 607 42.3
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 8.7e-85 318.9 607 45.5
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 8.7e-85 318.9 607 44.8
PSO063G6404 Papaver somniferum HOM05D004783 ORTHO05D005581 3.3e-84 317.0 646 31.7
Os02g0127600 Oryza sativa ssp. japonica HOM05D004783 ORTHO05D005581 1.3e-80 305.1 604 49.2
CDE09G0275 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 2.2e-80 304.3 655 39.2
arahy.Tifrunner.gnm1.ann1.6TK8TS Arachis hypogaea HOM05D004783 ORTHO05D005581 6.3e-75 286.2 363 43.3
arahy.Tifrunner.gnm1.ann1.IFYB19 Arachis hypogaea HOM05D004783 ORTHO05D005581 1.1e-74 285.4 363 43.3
DCAR_019962 Daucus carota HOM05D004783 ORTHO05D005581 1.2e-73 282.0 645 42.0
arahy.Tifrunner.gnm1.ann1.7R7ZTH Arachis hypogaea HOM05D004783 ORTHO05D005581 2.7e-70 270.8 349 43.0
arahy.Tifrunner.gnm1.ann1.U93Q4L Arachis hypogaea HOM05D004783 ORTHO05D005581 6.1e-70 269.6 371 41.2
COL.COLO4_04586 Corchorus olitorius HOM05D004783 ORTHO05D005581 3.9e-69 266.9 635 32.1
Zm00001eb231010 Zea mays HOM05D004783 ORTHO05D005581 6.7e-69 266.2 607 39.4
MBI04_g31977_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 2.2e-67 261.2 282 47.9
FAN16G1650 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.8e-67 260.8 402 67.2
FAN10G2924 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.7e-67 260.4 402 60.0
FAN27G1421 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.1e-66 257.3 405 62.0
FAN05G2593 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.1e-66 256.9 402 66.7
arahy.Tifrunner.gnm1.ann1.I0AKGU Arachis hypogaea HOM05D004783 ORTHO05D005581 5.9e-65 253.1 330 41.8
arahy.Tifrunner.gnm1.ann1.Z9P42K Arachis hypogaea HOM05D004783 ORTHO05D005581 1.7e-64 251.5 330 42.4
arahy.Tifrunner.gnm1.ann1.EB1NGP Arachis hypogaea HOM05D004783 ORTHO05D005581 4.1e-58 230.3 330 39.7
FAN11G3663 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.2e-55 220.7 402 64.2
arahy.Tifrunner.gnm1.ann1.6847YK Arachis hypogaea HOM05D004783 ORTHO05D005581 2.7e-49 201.1 280 40.4
Potri.003G000701 Populus trichocarpa HOM05D004783 ORTHO05D005581 1.2e-38 165.6 143 55.9
BolC6t39583H Brassica oleracea HOM05D004783 ORTHO05D005581 3.6e-38 164.1 393 45.3
CAN.G986.33 Capsicum annuum HOM05D004783 ORTHO05D005581 7.5e-36 156.4 314 33.8
MBI04_g31976_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 2.9e-35 154.5 146 51.4
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 1.1e-34 152.5 325 28.9
CDE12G0310 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 1.6e-33 148.7 463 26.1
SEGI_26474 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 7.5e-28 129.8 423 47.0
HPP92_028305 Vanilla planifolia HOM05D004783 ORTHO05D005581 2.4e-26 124.8 190 37.9
Potri.003G000601 Populus trichocarpa HOM05D004783 ORTHO05D005581 4.6e-25 120.6 144 41.7
BolC6t39586H Brassica oleracea HOM05D004783 ORTHO05D005581 1.7e-24 118.6 145 41.4
HPP92_028304 Vanilla planifolia HOM05D004783 ORTHO05D005581 1.6e-22 112.1 161 37.9
FAN07G0420 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.1e-22 111.7 273 72.9
CAN.G986.34 Capsicum annuum HOM05D004783 ORTHO05D005581 8.9e-21 106.3 147 42.9
HPP92_028041 Vanilla planifolia HOM05D004783 ORTHO05D005581 8.3e-19 99.8 148 43.9
CDE01G0049 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 5.4e-18 97.1 132 37.9
DCAR_003089 Daucus carota HOM05D004783 ORTHO05D005581 8.6e-16 89.7 125 38.4
FAN26G1702 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.6e-14 84.3 73 50.7
FAN09G4036 Fragaria x ananassa HOM05D004783 ORTHO05D005581 8.1e-14 83.2 74 48.6
FAN09G0480 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.1e-13 82.8 72 50.0
FAN18G1946 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.1e-13 82.8 72 50.0
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 4.6e-09 67.4 167 25.7
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.0e-08 66.2 225 23.1
Migut.K01489 Erythranthe guttata HOM05D005622 ORTHO05D002854 1.3e-08 65.9 345 23.5
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 2.3e-08 65.1 257 23.0
FAN14G5569 Fragaria x ananassa HOM05D006596 ORTHO05D008497 8.6e-08 63.2 323 21.7
ATR0564G055 Amborella trichopoda HOM05D002986 ORTHO05D007611 1.5e-07 62.4 75 44.0
HanXRQChr14g0453291 Helianthus annuus HOM05D006596 ORTHO05D008497 4.3e-07 60.8 149 30.2
HanXRQChr02g0043781 Helianthus annuus HOM05D007383 ORTHO05D009254 7.3e-07 60.1 100 36.0
HanXRQChr14g0455831 Helianthus annuus HOM05D007383 ORTHO05D009254 7.3e-07 60.1 100 36.0
Cfa019063 Carpinus fangiana HOM05D007383 ORTHO05D009254 9.6e-07 59.7 93 39.8
Haze_07432 Corylus avellana HOM05D007383 ORTHO05D009254 9.6e-07 59.7 93 39.8
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 2.1e-06 58.5 192 23.4
CiPaw.01G197700 Carya illinoinensis HOM05D000424 ORTHO05D000355 2.8e-06 58.2 131 28.2
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 3.6e-06 57.8 256 23.0
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 3.6e-06 57.8 140 30.0
Thhalv10005512m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 4.7e-06 57.4 304 20.1
Lsat_1_v5_gn_1_11261 Lactuca sativa HOM05D007383 ORTHO05D009254 6.2e-06 57.0 94 37.2
MD15G1148600 Malus domestica HOM05D006258 ORTHO05D007961 6.2e-06 57.0 142 21.8
SEGI_12422 Sequoiadendron giganteum HOM05D000424 ORTHO05D009113 6.2e-06 57.0 106 30.2
Sopen04g030130 Solanum pennellii HOM05D007402 ORTHO05D003673 8.1e-06 56.6 205 22.0


User provided reference genes

Program Settings