Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 1.1e-65 253.1 124 100.0
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.2e-16 89.4 93 54.8
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 4.8e-16 88.2 89 55.1
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 8.3e-16 87.4 91 52.7
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.8e-15 86.3 94 55.3
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.8e-15 86.3 94 55.3
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 1.8e-15 86.3 88 54.5
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.8e-15 86.3 80 52.5
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.4e-15 85.9 80 52.5
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 4.1e-15 85.1 95 55.8
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 7.0e-15 84.3 94 52.1
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 9.1e-15 84.0 94 54.3
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.6e-14 83.2 100 50.0
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.6e-14 83.2 100 50.0
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.6e-14 83.2 100 50.0
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.6e-14 83.2 92 55.4
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.6e-14 83.2 84 53.6
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 2.7e-14 82.4 91 48.4
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.5e-14 81.6 85 52.9
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.0e-13 80.5 90 48.9
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.7e-13 79.7 88 51.1
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.7e-13 79.7 82 50.0
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 2.2e-13 79.3 89 44.9
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 2.9e-13 79.0 83 48.2
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 3.8e-13 78.6 63 60.3
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 1.1e-12 77.0 92 52.2
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.5e-12 76.6 78 51.3
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.9e-12 76.3 63 58.7
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 2.5e-12 75.9 39 89.7
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.2e-12 75.5 80 51.2
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 3.2e-12 75.5 38 86.8
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.2e-12 75.5 68 54.4
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 5.5e-12 74.7 57 66.7
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.5e-12 74.7 90 45.6
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.2e-12 74.3 89 46.1
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 9.4e-12 73.9 69 52.2
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.4e-12 73.9 39 82.1
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.4e-12 73.9 39 82.1
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 1.2e-11 73.6 49 71.4
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.2e-11 73.6 128 44.5
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.2e-11 73.6 39 74.4
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.6e-11 73.2 80 52.5
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.6e-11 73.2 63 58.7
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.6e-11 73.2 35 85.7
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 2.1e-11 72.8 94 50.0
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 2.1e-11 72.8 46 69.6
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 2.1e-11 72.8 39 74.4
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 2.1e-11 72.8 94 50.0
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 2.7e-11 72.4 64 56.2
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.7e-11 72.4 45 71.1
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.7e-11 72.4 41 78.0
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.7e-11 72.4 41 78.0
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 2.7e-11 72.4 63 57.1
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 2.7e-11 72.4 90 44.4
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 3.6e-11 72.0 55 63.6
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 3.6e-11 72.0 35 85.7
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.7e-11 71.6 56 62.5
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.7e-11 71.6 80 47.5
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.7e-11 71.6 41 80.5
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.7e-11 71.6 35 88.6
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.7e-11 71.6 45 68.9
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.7e-11 71.6 45 68.9
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 6.1e-11 71.2 81 49.4
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 6.1e-11 71.2 35 82.9
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 8.0e-11 70.9 82 47.6
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 8.0e-11 70.9 72 54.2
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.0e-10 70.5 51 62.7
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.0e-10 70.5 34 85.3
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.0e-10 70.5 79 46.8
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.0e-10 70.5 35 82.9
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.0e-10 70.5 35 82.9
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 1.0e-10 70.5 35 82.9
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.0e-10 70.5 46 69.6
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.0e-10 70.5 95 48.4
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.0e-10 70.5 85 45.9
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.4e-10 70.1 80 46.2
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.4e-10 70.1 80 47.5
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.8e-10 69.7 85 45.9
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 2.3e-10 69.3 80 48.8
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 2.3e-10 69.3 119 42.9
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.3e-10 69.3 43 72.1
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 2.3e-10 69.3 94 43.6
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.0e-10 68.9 95 48.4
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 3.0e-10 68.9 34 85.3
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 4.0e-10 68.6 95 46.3
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 4.0e-10 68.6 45 68.9
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.0e-10 68.6 84 47.6
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 5.2e-10 68.2 56 60.7
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 5.2e-10 68.2 84 46.4
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 5.2e-10 68.2 84 47.6
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.2e-10 68.2 51 60.8
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.2e-10 68.2 43 67.4
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 5.2e-10 68.2 66 56.1
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.8e-10 67.8 35 80.0
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.8e-10 67.8 35 80.0
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.8e-10 67.8 122 34.4
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 6.8e-10 67.8 34 82.4
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 8.8e-10 67.4 33 81.8
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 8.8e-10 67.4 85 49.4
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.2e-09 67.0 35 82.9
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.5e-09 66.6 41 70.7
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.5e-09 66.6 41 70.7
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 2.0e-09 66.2 61 52.5
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.0e-09 66.2 41 70.7
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.0e-09 66.2 86 45.3
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.0e-09 66.2 35 74.3
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.6e-09 65.9 37 78.4
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 2.6e-09 65.9 94 47.9
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 2.6e-09 65.9 94 47.9
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.6e-09 65.9 80 47.5
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 2.6e-09 65.9 34 76.5
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.6e-09 65.9 34 76.5
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 3.4e-09 65.5 68 47.1
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 4.4e-09 65.1 95 45.3
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 5.7e-09 64.7 33 78.8
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 5.7e-09 64.7 80 46.2
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 5.7e-09 64.7 42 64.3
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 5.7e-09 64.7 88 44.3
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 7.5e-09 64.3 64 46.9
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 7.5e-09 64.3 97 43.3
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 7.5e-09 64.3 99 44.4
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 9.8e-09 63.9 30 93.3
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 9.8e-09 63.9 81 43.2
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 9.8e-09 63.9 83 39.8
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.3e-08 63.5 99 43.4
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 1.3e-08 63.5 39 69.2
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 1.3e-08 63.5 90 42.2
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.7e-08 63.2 32 81.2
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 2.2e-08 62.8 98 40.8
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.2e-08 62.8 31 80.6
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.2e-08 62.8 47 61.7
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.2e-08 62.8 75 46.7
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.8e-08 62.4 37 67.6
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 2.8e-08 62.4 39 66.7
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 2.8e-08 62.4 76 43.4
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.7e-08 62.0 31 83.9
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 3.7e-08 62.0 73 46.6
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 4.9e-08 61.6 32 78.1
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.9e-08 61.6 39 71.8
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 4.9e-08 61.6 84 46.4
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 6.3e-08 61.2 92 42.4
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 6.3e-08 61.2 30 86.7
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 6.3e-08 61.2 88 39.8
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 6.3e-08 61.2 87 42.5
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.1e-07 60.5 64 53.1
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 1.1e-07 60.5 47 55.3
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 1.4e-07 60.1 48 60.4
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.4e-07 60.1 82 42.7
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.4e-07 60.1 31 80.6
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.4e-07 60.1 83 39.8
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.4e-07 60.1 33 72.7
CSS0025582 Camellia sinensis var. sinensis HOM05D003654 ORTHO05D004176 2.4e-07 59.3 35 74.3
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.4e-07 59.3 30 83.3
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 4.1e-07 58.5 30 80.0
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 4.1e-07 58.5 82 43.9
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.1e-07 58.5 38 68.4
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 7.0e-07 57.8 82 45.1
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.0e-07 57.8 38 63.2
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 7.0e-07 57.8 32 71.9
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 9.2e-07 57.4 29 82.8
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.2e-07 57.4 89 40.4
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 1.2e-06 57.0 73 47.9
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 1.6e-06 56.6 82 37.8
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.6e-06 56.6 29 79.3
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.0e-06 56.2 30 80.0
Hma1.2p1_2135F.1_g314830 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.0e-06 56.2 36 69.4
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 2.7e-06 55.8 30 76.7
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 2.7e-06 55.8 63 49.2
Hma1.2p1_0629F.1_g192090 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.5e-06 55.1 36 69.4
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 4.5e-06 55.1 30 76.7
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 4.5e-06 55.1 80 38.8
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 7.7e-06 54.3 80 38.8
Sopen02g020500 Solanum pennellii HOM05D003654 ORTHO05D004176 7.7e-06 54.3 78 42.3


User provided reference genes

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