Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 2.7e-161 572.0 300 100.0
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 7.7e-84 314.7 289 60.6
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 4.0e-80 302.4 267 62.2
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 5.2e-80 302.0 191 77.0
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 7.5e-79 298.1 267 61.0
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 9.7e-79 297.7 267 58.1
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 1.7e-78 297.0 269 60.2
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 3.7e-78 295.8 170 83.5
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 6.3e-78 295.0 267 61.0
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 8.2e-78 294.7 295 61.7
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 1.1e-77 294.3 160 84.4
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 2.4e-77 293.1 167 82.6
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 3.1e-77 292.7 301 57.1
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 3.1e-77 292.7 163 85.3
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 3.1e-77 292.7 275 59.6
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 5.3e-77 292.0 161 85.1
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 7.0e-77 291.6 267 63.7
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 7.0e-77 291.6 167 82.6
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 9.1e-77 291.2 159 84.9
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.2e-76 290.8 302 56.0
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 1.6e-76 290.4 159 85.5
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 2.0e-76 290.0 267 61.8
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 2.0e-76 290.0 187 74.9
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 2.7e-76 289.7 268 58.6
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 3.5e-76 289.3 276 58.0
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 3.5e-76 289.3 268 63.4
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 3.5e-76 289.3 161 84.5
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 3.5e-76 289.3 163 81.6
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 4.5e-76 288.9 268 63.8
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 7.7e-76 288.1 170 79.4
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 1.0e-75 287.7 167 80.8
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 1.7e-75 287.0 162 84.0
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.7e-75 287.0 161 83.9
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 2.9e-75 286.2 172 78.5
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 3.8e-75 285.8 162 82.1
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 1.1e-74 284.3 161 83.9
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 1.1e-74 284.3 162 83.3
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 1.5e-74 283.9 190 73.2
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 2.5e-74 283.1 173 78.0
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.2e-74 282.7 169 79.9
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 3.2e-74 282.7 159 83.0
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 3.2e-74 282.7 188 73.9
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 5.5e-74 282.0 161 82.0
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 7.2e-74 281.6 160 82.5
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.2e-73 280.8 190 72.6
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 2.1e-73 280.0 276 59.4
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.1e-73 280.0 159 82.4
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 4.7e-73 278.9 172 77.3
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 4.7e-73 278.9 162 81.5
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 6.1e-73 278.5 209 71.3
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 6.1e-73 278.5 267 56.9
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 1.0e-72 277.7 172 75.6
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 1.0e-72 277.7 267 56.6
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 1.4e-72 277.3 175 75.4
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 4.0e-72 275.8 163 81.0
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 6.8e-72 275.0 149 84.6
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 2.0e-71 273.5 166 78.3
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 5.7e-71 271.9 207 68.1
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 5.7e-71 271.9 266 58.3
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 7.5e-71 271.6 172 75.0
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 9.8e-71 271.2 268 58.6
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 1.3e-70 270.8 275 60.4
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 1.3e-70 270.8 267 56.2
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.7e-70 270.4 329 51.1
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 2.2e-70 270.0 160 80.0
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 4.8e-70 268.9 149 83.9
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 6.3e-70 268.5 177 72.9
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 1.1e-69 267.7 200 66.5
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 1.1e-69 267.7 177 72.9
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 1.4e-69 267.3 298 53.4
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 7.0e-69 265.0 175 72.0
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 7.0e-69 265.0 175 72.0
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 7.0e-69 265.0 163 78.5
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 7.7e-68 261.5 151 83.4
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 1.7e-67 260.4 230 62.6
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.2e-67 260.0 150 83.3
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 6.5e-67 258.5 167 75.4
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 7.2e-66 255.0 301 52.2
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 2.7e-65 253.1 192 67.7
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 8.0e-65 251.5 275 53.1
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 6.8e-64 248.4 267 53.6
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 1.5e-63 247.3 151 76.2
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.4e-61 240.0 224 60.7
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 7.0e-61 238.4 388 42.5
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 9.2e-61 238.0 160 70.0
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 5.0e-59 232.3 131 83.2
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 5.6e-58 228.8 323 45.5
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 2.1e-57 226.9 126 81.7
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 2.8e-57 226.5 132 78.8
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 6.1e-57 225.3 363 40.2
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 8.0e-57 224.9 127 81.1
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 1.5e-55 220.7 213 54.5
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 2.2e-54 216.9 291 45.0
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 2.7e-52 209.9 227 54.6
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 6.6e-51 205.3 169 65.7
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 8.6e-51 204.9 167 58.7
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 2.0e-47 193.7 274 48.2
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 4.4e-47 192.6 101 87.1
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.6e-44 184.1 106 79.2
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 2.0e-44 183.7 265 46.8
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 2.1e-41 173.7 144 62.5
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 3.6e-41 172.9 112 74.1
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 2.3e-40 170.2 286 39.9
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 1.3e-38 164.5 114 66.7
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 7.1e-37 158.7 171 53.2
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 8.6e-35 151.8 96 76.0
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 7.1e-29 132.1 79 78.5
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 1.0e-27 128.3 79 75.9
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 1.7e-27 127.5 126 54.8
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 6.6e-27 125.6 107 62.6
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 4.0e-24 116.3 110 57.3
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 4.9e-22 109.4 112 54.5
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 5.8e-15 85.9 62 64.5
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 6.7e-11 72.4 56 67.9
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 2.4e-08 63.9 34 85.3
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 5.8e-07 59.3 50 64.0


User provided reference genes

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