Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 5.6e-172 609.4 821 100.0
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 2.4e-82 311.6 249 65.5
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 2.9e-80 304.7 247 63.2
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 2.1e-78 298.5 252 59.5
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 2.8e-78 298.1 249 62.2
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.4e-76 291.2 250 63.2
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 3.4e-76 291.2 242 62.8
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 1.3e-75 289.3 246 64.6
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 8.3e-75 286.6 252 59.5
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 8.3e-75 286.6 780 80.9
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.2e-73 282.7 249 59.0
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.6e-73 282.3 249 59.8
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.6e-73 282.3 233 61.4
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 5.9e-73 280.4 252 59.1
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 7.8e-73 280.0 251 57.4
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.7e-72 278.9 239 60.3
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 5.0e-72 277.3 252 60.3
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.1e-71 276.2 251 57.0
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 2.1e-70 271.9 250 56.4
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.7e-70 270.8 250 56.0
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.4e-69 269.2 249 57.4
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.3e-69 268.5 253 59.7
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.2e-68 266.2 263 57.8
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 3.4e-68 264.6 248 55.6
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 3.4e-68 264.6 181 72.4
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 3.4e-68 264.6 199 65.3
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.7e-67 262.3 207 64.3
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 2.9e-67 261.5 252 55.2
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.1e-66 259.6 295 52.2
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.2e-66 258.1 228 54.8
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.1e-66 257.7 193 65.3
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.1e-66 257.7 193 64.8
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 5.4e-66 257.3 240 54.2
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 7.0e-66 256.9 178 73.0
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 9.2e-66 256.5 193 64.2
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 9.2e-66 256.5 193 64.8
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 9.2e-66 256.5 247 53.8
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.2e-65 256.1 251 54.2
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 1.6e-65 255.8 249 54.2
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.3e-64 252.7 238 54.2
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 3.9e-64 251.1 244 53.7
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.0e-64 250.8 182 73.1
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 5.0e-64 250.8 249 53.8
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.9e-63 248.8 290 51.4
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 2.5e-63 248.4 230 59.6
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 7.3e-63 246.9 230 53.9
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 7.3e-63 246.9 181 69.6
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 9.5e-63 246.5 259 51.7
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-62 245.7 152 79.6
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-62 245.7 152 79.6
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 1.6e-62 245.7 193 64.2
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 2.1e-62 245.4 198 62.6
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 2.1e-62 245.4 241 55.6
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 3.6e-62 244.6 246 55.7
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 8.1e-62 243.4 173 71.7
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.8e-61 242.3 172 71.5
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.3e-61 241.9 202 65.8
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 6.8e-61 240.4 255 54.1
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 4.4e-60 237.7 253 56.1
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-59 236.1 251 51.0
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-59 235.7 202 62.9
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 2.9e-59 235.0 210 61.0
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 6.4e-59 233.8 241 52.7
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-58 232.6 210 59.0
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-58 232.6 241 51.5
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 4.1e-58 231.1 197 58.9
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 7.1e-58 230.3 200 57.5
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.2e-57 229.6 255 47.8
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.6e-57 229.2 227 49.3
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 3.5e-57 228.0 209 57.9
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.8e-57 226.9 188 63.3
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 1.7e-56 225.7 216 54.2
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 1.7e-56 225.7 208 57.2
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.3e-56 225.3 195 64.1
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.5e-55 221.9 220 50.0
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 5.6e-55 220.7 258 46.5
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 9.5e-55 219.9 255 46.7
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 3.6e-54 218.0 253 49.4
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 8.1e-54 216.9 263 45.6
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 2.0e-52 212.2 203 55.7
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 2.0e-52 212.2 260 45.8
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.6e-52 211.8 213 54.0
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.4e-50 206.1 120 84.2
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 2.1e-49 202.2 200 53.0
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.0e-48 199.9 160 61.2
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.5e-47 196.1 179 55.9
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.5e-47 196.1 123 81.3
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 5.6e-47 194.1 197 53.3
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 1.4e-45 189.5 200 53.5
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 1.2e-44 186.4 199 52.8
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.6e-44 185.3 167 56.3
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.6e-44 185.3 167 56.3
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 3.4e-44 184.9 123 77.2
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 5.8e-44 184.1 229 46.7
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 7.6e-44 183.7 212 48.6
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 7.6e-44 183.7 206 49.0
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-42 179.5 133 70.7
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 3.2e-42 178.3 171 55.0
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.2e-42 178.3 181 53.0
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 7.1e-42 177.2 178 54.5
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.5e-41 174.9 182 57.1
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 3.5e-41 174.9 107 78.5
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 6.6e-40 170.6 193 48.7
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 8.7e-40 170.2 110 74.5
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 6.2e-38 164.1 173 53.8
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 4.0e-37 161.4 207 45.9
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 4.0e-37 161.4 133 57.1
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 3.4e-36 158.3 144 56.9
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 2.9e-35 155.2 156 50.0
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.2e-34 151.8 154 50.6
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 3.2e-34 151.8 153 52.3
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 3.2e-34 151.8 152 50.7
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 1.2e-33 149.8 129 53.5
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 4.6e-33 147.9 178 47.2
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 3.0e-32 145.2 131 56.5
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-30 139.0 117 55.6
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.4e-29 135.6 162 47.5
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 9.9e-28 130.2 152 44.1
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 2.2e-27 129.0 134 56.7
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 2.2e-27 129.0 157 43.3
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 7.1e-26 124.0 213 37.6
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.8e-22 111.3 154 39.0
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.1e-21 110.2 124 47.6
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.4e-21 109.8 118 44.9
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 1.2e-20 106.7 153 37.9
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 6.5e-19 100.9 157 34.4
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 5.1e-16 91.3 156 35.3
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 3.1e-13 82.0 99 46.5
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.5e-10 72.4 141 28.4
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 1.2e-09 70.1 160 28.8
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 1.6e-09 69.7 141 30.5
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 2.1e-09 69.3 160 28.8
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 2.1e-09 69.3 41 78.0
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.7e-09 68.9 141 28.4
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 3.6e-09 68.6 142 28.9
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 7.9e-09 67.4 138 30.4
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 7.9e-09 67.4 141 27.7
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 1.0e-08 67.0 160 30.0
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.4e-08 66.6 141 30.5
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.4e-08 66.6 141 30.5
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 1.8e-08 66.2 160 28.8
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 2.3e-08 65.9 160 25.0
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 2.3e-08 65.9 160 27.5
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 3.0e-08 65.5 152 27.0
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 3.9e-08 65.1 141 28.4
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 3.9e-08 65.1 141 27.0
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 3.9e-08 65.1 160 26.2
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 5.1e-08 64.7 160 28.8
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 6.7e-08 64.3 160 25.6
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 6.7e-08 64.3 141 28.4
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 8.8e-08 63.9 160 25.6
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 8.8e-08 63.9 141 27.7
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 8.8e-08 63.9 141 28.4
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 8.8e-08 63.9 160 25.6
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 1.9e-07 62.8 149 26.8
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 1.9e-07 62.8 144 26.4
Sopen06g008520 Solanum pennellii HOM05D002453 ORTHO05D002107 1.9e-07 62.8 137 27.7
AUR62008396 Chenopodium quinoa HOM05D002453 ORTHO05D002107 2.5e-07 62.4 141 27.7
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 2.5e-07 62.4 141 29.1
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 2.5e-07 62.4 160 24.4
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 3.3e-07 62.0 160 25.6
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 4.3e-07 61.6 141 26.2
Sc04g0002590 Simmondsia chinensis HOM05D002453 ORTHO05D002107 4.3e-07 61.6 163 27.0
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 5.7e-07 61.2 160 25.6
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 5.7e-07 61.2 141 29.1
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 5.7e-07 61.2 160 26.2
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 9.7e-07 60.5 148 26.4
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 1.7e-06 59.7 141 28.4
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 1.7e-06 59.7 141 28.4
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 4.8e-06 58.2 123 31.7
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 4.8e-06 58.2 141 24.1
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 4.8e-06 58.2 141 24.1
Ciclev10018977m.g Citrus clementina HOM05D002453 ORTHO05D002107 6.3e-06 57.8 160 25.0
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 6.3e-06 57.8 111 30.6
arahy.Tifrunner.gnm1.ann1.SFY2YX Arachis hypogaea HOM05D002453 ORTHO05D002107 8.2e-06 57.4 151 24.5
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 8.2e-06 57.4 142 27.5
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 8.2e-06 57.4 141 26.2
PSO339G0892 Papaver somniferum HOM05D007559 ORTHO05D009642 8.2e-06 57.4 85 36.5


User provided reference genes

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