Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 9.4e-117 423.7 240 100.0
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.9e-72 276.6 208 67.8
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 9.5e-69 264.2 206 65.0
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.2e-68 263.8 206 64.6
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 4.0e-67 258.8 193 67.4
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.5e-66 256.9 198 66.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 9.9e-66 254.2 202 66.3
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 9.9e-66 254.2 198 65.7
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 9.9e-66 254.2 185 69.7
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 4.1e-64 248.8 195 64.1
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.6e-63 246.9 191 65.4
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.7e-63 246.1 195 63.6
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 3.5e-63 245.7 195 65.1
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 3.5e-63 245.7 193 64.8
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.3e-62 243.8 191 64.9
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.3e-62 243.8 198 62.1
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.3e-62 243.8 198 62.6
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.3e-62 243.0 191 64.9
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 3.9e-62 242.3 191 64.4
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.9e-62 242.3 198 62.1
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.6e-62 241.5 197 64.0
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.6e-62 241.5 197 64.0
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 8.6e-62 241.1 191 64.4
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 8.6e-62 241.1 194 62.4
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.5e-61 239.6 198 61.1
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 4.3e-61 238.8 194 61.9
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 9.6e-61 237.7 198 58.6
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 9.6e-61 237.7 198 61.6
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.6e-60 236.9 196 61.2
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 2.1e-60 236.5 194 60.8
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 3.6e-60 235.7 201 59.7
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 4.7e-60 235.3 201 59.7
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 4.7e-60 235.3 191 63.4
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 2.4e-59 233.0 198 60.1
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.4e-59 233.0 191 61.3
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 3.1e-59 232.6 193 61.1
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 3.1e-59 232.6 191 60.7
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 4.0e-59 232.3 198 57.6
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 6.9e-59 231.5 196 59.7
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.0e-58 229.9 197 59.9
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 2.6e-58 229.6 191 60.2
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 4.4e-58 228.8 201 57.7
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 5.8e-58 228.4 197 57.9
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.6e-58 228.0 182 64.8
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.7e-57 226.9 220 58.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 2.9e-57 226.1 196 60.2
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.8e-57 225.7 220 57.3
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 8.4e-57 224.6 192 59.4
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.1e-56 224.2 192 58.9
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.4e-56 223.8 198 59.6
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.2e-56 222.6 213 56.8
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 4.2e-56 222.2 202 57.4
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.6e-55 220.3 194 56.7
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 1.6e-55 220.3 191 58.1
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.1e-55 219.9 188 58.0
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 2.7e-55 219.5 190 60.0
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 3.5e-55 219.2 192 57.8
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 6.0e-55 218.4 207 57.5
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 6.0e-55 218.4 198 57.6
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.3e-54 217.2 196 57.7
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.3e-54 217.2 195 57.4
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 1.3e-54 217.2 170 64.7
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 2.3e-54 216.5 202 55.9
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.3e-54 216.5 192 56.8
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 3.9e-54 215.7 191 58.6
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.1e-53 214.2 188 58.0
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.5e-53 213.0 188 58.5
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.3e-53 212.6 197 58.9
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 9.6e-53 211.1 196 56.6
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 9.6e-53 211.1 194 54.6
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 1.3e-52 210.7 204 54.9
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.6e-52 210.3 190 53.7
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 2.1e-52 209.9 192 55.2
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 2.1e-52 209.9 192 54.7
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 2.1e-52 209.9 192 54.7
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 2.1e-52 209.9 200 55.0
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.8e-52 209.5 208 55.3
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.6e-52 209.1 192 55.2
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 3.6e-52 209.1 195 55.4
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 3.6e-52 209.1 188 57.4
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.4e-51 207.2 188 55.3
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 1.4e-51 207.2 186 54.8
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.5e-50 203.8 188 55.9
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 2.6e-50 203.0 188 55.9
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 3.4e-50 202.6 188 55.9
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 3.4e-50 202.6 192 56.2
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 7.6e-50 201.4 157 68.2
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 9.9e-50 201.1 193 52.8
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 3.8e-49 199.1 192 55.2
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 4.9e-49 198.7 190 54.2
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 4.9e-49 198.7 192 53.6
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 4.9e-49 198.7 191 53.4
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.9e-48 196.8 215 49.3
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 2.4e-48 196.4 215 48.8
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 2.4e-48 196.4 195 52.3
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 3.2e-48 196.1 188 53.2
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 4.2e-48 195.7 176 56.2
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.3e-46 190.7 188 50.5
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 6.7e-46 188.3 194 51.5
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 6.7e-46 188.3 194 52.6
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 6.7e-46 188.3 194 51.5
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 8.7e-46 188.0 194 52.1
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-45 187.6 195 50.8
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 4.3e-45 185.7 192 49.5
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 3.7e-44 182.6 189 52.9
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 8.1e-44 181.4 129 67.4
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 3.1e-43 179.5 188 50.5
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 9.0e-43 177.9 193 49.7
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 2.0e-42 176.8 147 59.9
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 3.4e-42 176.0 195 49.7
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 3.8e-41 172.6 195 47.7
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.0e-38 164.5 198 45.5
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.6e-36 157.1 200 46.5
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.6e-36 157.1 208 45.7
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 6.9e-35 151.8 194 47.4
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.1e-31 140.2 120 61.7
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 2.1e-31 140.2 203 43.8
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 2.8e-28 129.8 110 60.9
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 6.9e-27 125.2 196 37.8
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 6.9e-27 125.2 196 37.2
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 6.9e-27 125.2 196 37.8
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 9.0e-27 124.8 196 37.2
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 2.0e-26 123.6 196 38.8
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.8e-25 119.4 196 40.3
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 4.2e-24 115.9 186 40.9
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 9.3e-24 114.8 196 37.2
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 9.3e-24 114.8 83 66.3
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 2.3e-22 110.2 183 39.3
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 6.7e-22 108.6 179 39.1
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 3.7e-20 102.8 181 34.3
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 6.9e-19 98.6 184 35.9
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 3.4e-18 96.3 170 37.1
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 7.7e-18 95.1 196 33.2
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.3e-17 94.4 187 34.2
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 6.7e-14 82.0 99 42.4
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 5.7e-13 79.0 85 48.2
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 1.2e-10 71.2 137 29.2
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 6.5e-09 65.5 50 56.0
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 8.5e-09 65.1 65 47.7
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 1.1e-08 64.7 127 35.4
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 1.9e-08 63.9 114 33.3
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.9e-08 63.9 69 53.6
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 2.5e-08 63.5 60 58.3
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 5.5e-08 62.4 60 56.7
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 5.5e-08 62.4 60 56.7
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 5.5e-08 62.4 60 56.7
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 3.0e-06 56.6 50 52.0


User provided reference genes

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