Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 1.5e-181 639.4 322 100.0
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 7.6e-146 520.8 358 76.5
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 7.3e-141 504.2 321 78.8
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 2.8e-140 502.3 330 77.3
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 8.1e-140 500.7 324 77.8
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 1.3e-137 493.4 311 78.1
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 3.8e-137 491.9 319 78.1
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 4.9e-137 491.5 310 78.7
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 4.9e-137 491.5 310 78.1
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 4.2e-136 488.4 308 80.5
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.2e-135 486.9 313 79.2
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 2.1e-135 486.1 320 77.2
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 3.5e-135 485.3 310 79.4
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 3.5e-135 485.3 318 75.5
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 3.5e-135 485.3 319 77.4
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 1.0e-134 483.8 311 77.2
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 1.0e-134 483.8 321 75.1
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 1.1e-133 480.3 311 77.8
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 5.6e-133 478.0 322 75.8
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 1.3e-132 476.9 309 77.0
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 1.3e-132 476.9 322 74.2
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 2.1e-132 476.1 322 75.5
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 2.1e-132 476.1 314 78.0
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 8.1e-132 474.2 316 75.3
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 1.4e-131 473.4 310 75.5
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 2.4e-131 472.6 318 74.2
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 3.1e-131 472.2 318 74.2
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 9.0e-131 470.7 313 75.1
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 9.0e-131 470.7 313 74.1
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 1.7e-129 466.5 309 75.7
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 2.2e-129 466.1 309 77.0
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 3.8e-129 465.3 316 74.4
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 1.1e-128 463.8 315 74.0
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 1.9e-128 463.0 314 73.6
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 1.9e-128 463.0 318 74.2
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 2.5e-128 462.6 323 73.1
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 3.2e-128 462.2 313 75.4
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 9.3e-128 460.7 312 74.7
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 2.7e-127 459.1 321 72.6
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 1.0e-126 457.2 313 74.4
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 1.0e-126 457.2 313 74.4
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 3.0e-126 455.7 321 71.7
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 3.0e-126 455.7 307 71.7
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 3.0e-126 455.7 307 71.7
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 6.7e-126 454.5 314 72.3
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 6.7e-126 454.5 310 74.5
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 1.1e-125 453.8 315 73.3
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 1.9e-125 453.0 318 72.0
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 2.5e-125 452.6 306 73.5
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 5.7e-125 451.4 329 70.2
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 7.4e-125 451.1 318 71.7
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 3.7e-124 448.7 320 73.4
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 8.2e-124 447.6 316 71.8
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 5.3e-123 444.9 327 71.3
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 5.3e-123 444.9 314 72.6
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 6.9e-123 444.5 318 70.1
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 9.0e-123 444.1 314 71.0
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 3.5e-119 432.2 308 71.8
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 1.0e-118 430.6 322 70.8
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 2.3e-118 429.5 306 70.3
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 3.0e-118 429.1 303 72.3
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 3.9e-118 428.7 306 72.5
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 5.1e-118 428.3 316 68.7
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 1.1e-117 427.2 305 69.8
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 3.7e-116 422.2 321 67.9
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 3.7e-116 422.2 265 79.2
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 4.1e-115 418.7 331 62.8
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 5.3e-115 418.3 327 65.4
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 5.3e-115 418.3 313 67.4
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 6.9e-115 417.9 303 70.0
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 9.0e-115 417.5 303 71.0
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 5.9e-114 414.8 303 69.6
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 1.3e-113 413.7 320 66.2
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 1.7e-113 413.3 303 69.0
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 1.7e-113 413.3 303 69.3
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 2.2e-113 412.9 278 72.3
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 3.8e-113 412.1 410 56.3
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 8.5e-113 411.0 303 69.0
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 3.2e-112 409.1 312 67.9
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 7.2e-112 407.9 313 65.8
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 2.1e-111 406.4 303 67.0
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 4.6e-111 405.2 306 65.7
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 4.6e-111 405.2 262 75.2
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 4.6e-111 405.2 303 68.3
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 6.7e-110 401.4 314 69.7
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 1.1e-109 400.6 302 67.5
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.5e-109 400.2 317 67.5
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 1.5e-109 400.2 304 67.1
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.7e-108 396.7 310 66.5
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 4.8e-108 395.2 310 65.8
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 3.1e-107 392.5 286 70.3
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.3e-105 387.1 282 71.6
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 3.2e-104 382.5 243 79.0
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 4.7e-103 378.6 309 65.4
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 7.9e-103 377.9 316 62.3
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 1.5e-101 373.6 238 78.6
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 5.9e-98 361.7 281 68.0
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.3e-97 360.5 302 63.6
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 6.5e-97 358.2 303 62.0
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 1.4e-86 323.9 314 59.2
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 4.5e-82 308.9 201 75.1
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 1.8e-54 217.2 230 53.9
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 2.6e-45 186.8 140 67.9
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 7.6e-45 185.3 302 39.4
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 2.2e-44 183.7 291 37.8
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 1.4e-43 181.0 319 37.3
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 1.4e-43 181.0 306 36.6
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 5.1e-41 172.6 306 36.9
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 1.2e-39 167.9 233 44.6
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 1.6e-39 167.5 131 63.4
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 4.0e-38 162.9 312 31.7
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 8.9e-38 161.8 237 43.5
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 3.9e-33 146.4 179 47.5
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 1.6e-26 124.4 137 51.8
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 6.2e-23 112.5 75 72.0
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 9.3e-19 98.6 139 44.6


User provided reference genes

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