Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0010140 Simmondsia chinensis HOM05D002778 ORTHO05D003112 1.7e-23 111.7 51 100.0
COL.COLO4_19026 Corchorus olitorius HOM05D002778 ORTHO05D003112 2.2e-15 84.7 40 85.0
TWI36G0848 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 2.9e-15 84.3 40 82.5
PGR102G1539 Punica granatum HOM05D002778 ORTHO05D003112 6.4e-15 83.2 40 80.0
SalBow4G0971 Salvia bowleyana HOM05D002778 ORTHO05D003112 8.4e-15 82.8 40 87.5
Duzib187G1568 Durio zibethinus HOM05D002778 ORTHO05D003112 1.1e-14 82.4 40 82.5
Gohir.A05G063800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.1e-14 82.4 40 82.5
Gohir.D05G066400 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.1e-14 82.4 40 82.5
Gorai.009G067200 Gossypium raimondii HOM05D002778 ORTHO05D003112 1.1e-14 82.4 40 82.5
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 1.1e-14 82.4 40 75.0
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 1.1e-14 82.4 40 75.0
Nn8g40687 Nelumbo nucifera HOM05D002778 ORTHO05D003112 1.4e-14 82.0 40 80.0
Cc01_g10000 Coffea canephora HOM05D002778 ORTHO05D003112 1.9e-14 81.6 40 85.0
RcHm_v2.0_Chr6g0305041 Rosa chinensis HOM05D002778 ORTHO05D003112 2.4e-14 81.3 40 80.0
Eucgr.C02016 Eucalyptus grandis HOM05D002778 ORTHO05D003112 5.4e-14 80.1 40 80.0
Eucgr.J02702 Eucalyptus grandis HOM05D002778 ORTHO05D003112 5.4e-14 80.1 40 80.0
Manes.03G079400 Manihot esculenta HOM05D002778 ORTHO05D003112 5.4e-14 80.1 40 77.5
CiPaw.07G212100 Carya illinoinensis HOM05D002778 ORTHO05D003112 7.1e-14 79.7 40 77.5
Haze_21753 Corylus avellana HOM05D002778 ORTHO05D003112 7.1e-14 79.7 40 77.5
Sed0006590 Sechium edule HOM05D002778 ORTHO05D003112 7.1e-14 79.7 40 77.5
Glyma.14G134900 Glycine max HOM05D002778 ORTHO05D003112 9.2e-14 79.3 40 77.5
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 9.2e-14 79.3 40 77.5
Potri.018G007300 Populus trichocarpa HOM05D002778 ORTHO05D003112 9.2e-14 79.3 40 75.0
Thecc.09G007900 Theobroma cacao HOM05D002778 ORTHO05D003112 9.2e-14 79.3 40 80.0
Cpa.g.sc23.21 Carica papaya HOM05D002778 ORTHO05D003112 1.2e-13 79.0 40 80.0
Eucgr.C02015 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.2e-13 79.0 40 75.0
Manes.15G098500 Manihot esculenta HOM05D002778 ORTHO05D003112 1.2e-13 79.0 40 77.5
Aa31LG3G16440 Aethionema arabicum HOM05D002778 ORTHO05D003112 1.6e-13 78.6 40 80.0
Thhalv10016058m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 1.6e-13 78.6 40 77.5
Peaxi162Scf00784g00034 Petunia axillaris HOM05D002778 ORTHO05D003112 1.6e-13 78.6 40 77.5
CSS0015542 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 2.1e-13 78.2 39 74.4
CAN.G809.78 Capsicum annuum HOM05D002778 ORTHO05D003112 2.1e-13 78.2 40 77.5
HanXRQChr17g0538041 Helianthus annuus HOM05D002778 ORTHO05D003112 2.1e-13 78.2 40 72.5
MBI16_g36963_MAGBIO Magnolia biondii HOM05D002778 ORTHO05D003112 2.1e-13 78.2 39 71.8
QL12p025213 Quercus lobata HOM05D002778 ORTHO05D003112 2.1e-13 78.2 40 72.5
AT5G10695 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 3.5e-13 77.4 52 65.4
CARHR202640 Cardamine hirsuta HOM05D002778 ORTHO05D003112 3.5e-13 77.4 40 77.5
MELO3C011187.2 Cucumis melo HOM05D002778 ORTHO05D003112 3.5e-13 77.4 40 72.5
Sed0003600 Sechium edule HOM05D002778 ORTHO05D003112 3.5e-13 77.4 40 67.5
CiPaw.08G020200 Carya illinoinensis HOM05D002778 ORTHO05D003112 6.0e-13 76.6 40 72.5
Solyc02g081560.1 Solanum lycopersicum HOM05D002778 ORTHO05D003112 7.8e-13 76.3 40 75.0
Ciclev10010727m.g Citrus clementina HOM05D002778 ORTHO05D003112 1.0e-12 75.9 40 75.0
Lsat_1_v5_gn_3_19520 Lactuca sativa HOM05D002778 ORTHO05D003112 1.0e-12 75.9 40 65.0
Lalb_Chr08g0243521 Lupinus albus HOM05D002778 ORTHO05D003112 1.0e-12 75.9 40 70.0
Glyma.17G197800 Glycine max HOM05D002778 ORTHO05D003112 1.3e-12 75.5 40 72.5
ATR0580G016 Amborella trichopoda HOM05D002778 ORTHO05D003112 2.3e-12 74.7 40 72.5
TPR.G12466 Trifolium pratense HOM05D002778 ORTHO05D003112 2.3e-12 74.7 39 71.8
Glyma.04G075800 Glycine max HOM05D002778 ORTHO05D003112 3.9e-12 73.9 39 71.8
Phvul.001G059600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 3.9e-12 73.9 40 67.5
Phvul.009G101600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 5.1e-12 73.6 39 69.2
Carub.0006s0916 Capsella rubella HOM05D002778 ORTHO05D003112 6.6e-12 73.2 39 74.4
Prupe.1G459600 Prunus persica HOM05D002778 ORTHO05D003112 1.1e-11 72.4 39 71.8
Duzib168G0124 Durio zibethinus HOM05D002778 ORTHO05D003112 1.5e-11 72.0 40 67.5
Manes.09G005702 Manihot esculenta HOM05D002778 ORTHO05D003112 2.5e-11 71.2 39 66.7
Nitab4.5_0000584g0040 Nicotiana tabacum HOM05D002778 ORTHO05D003112 2.5e-11 71.2 40 67.5
Medtr3g108890 Medicago truncatula HOM05D002778 ORTHO05D003112 3.3e-11 70.9 39 69.2
Lj1g0023199 Lotus japonicus HOM05D002778 ORTHO05D003112 7.3e-11 69.7 39 69.2
Manes.14G162900 Manihot esculenta HOM05D002778 ORTHO05D003112 7.3e-11 69.7 39 64.1
Thecc.09G191000 Theobroma cacao HOM05D002778 ORTHO05D003112 1.3e-10 68.9 40 65.0
TWI75G0683 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 3.6e-10 67.4 40 62.5
AL8G33050 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 6.2e-10 66.6 39 64.1
AT5G57123 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 6.2e-10 66.6 39 64.1
BcaB08g36001 Brassica carinata HOM05D002778 ORTHO05D003112 6.2e-10 66.6 39 64.1
BcaC04g20009 Brassica carinata HOM05D002778 ORTHO05D003112 6.2e-10 66.6 39 64.1
C09p48860 Brassica napus HOM05D002778 ORTHO05D003112 6.2e-10 66.6 39 64.1
BolC9t57733H Brassica oleracea HOM05D002778 ORTHO05D003112 6.2e-10 66.6 39 64.1
Carub.0008s1763 Capsella rubella HOM05D002778 ORTHO05D003112 6.2e-10 66.6 39 64.1
PSO063G3231 Papaver somniferum HOM05D002778 ORTHO05D003112 1.1e-09 65.9 40 55.0
PSO063G5619 Papaver somniferum HOM05D002778 ORTHO05D003112 1.1e-09 65.9 40 55.0
PSO170G0913 Papaver somniferum HOM05D002778 ORTHO05D003112 1.1e-09 65.9 40 55.0
PSO170G3710 Papaver somniferum HOM05D002778 ORTHO05D003112 1.1e-09 65.9 40 55.0
RcHm_v2.0_Chr4g0399141 Rosa chinensis HOM05D002778 ORTHO05D003112 1.1e-09 65.9 40 60.0
BcaB01g04445 Brassica carinata HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 61.5
BcaC01g06467 Brassica carinata HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 61.5
BcaC01g06468 Brassica carinata HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 61.5
BcaNung05127 Brassica carinata HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 61.5
A03p12970 Brassica napus HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 61.5
A10p14450 Brassica napus HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 61.5
C03p15140 Brassica napus HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 61.5
BraA03t10605Z Brassica rapa HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 61.5
BraA10t43536Z Brassica rapa HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 61.5
Manes.06G018000 Manihot esculenta HOM05D002778 ORTHO05D003112 1.4e-09 65.5 39 59.0
Prupe.1G073400 Prunus persica HOM05D002778 ORTHO05D003112 1.4e-09 65.5 40 60.0
CARHR270900 Cardamine hirsuta HOM05D002778 ORTHO05D003112 1.8e-09 65.1 39 61.5
DCAR_018016 Daucus carota HOM05D002778 ORTHO05D003112 1.8e-09 65.1 42 61.9
Eucgr.C02014 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.8e-09 65.1 40 60.0
Thhalv10015218m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 1.8e-09 65.1 39 61.5
FvH4_4g07010 Fragaria vesca HOM05D002778 ORTHO05D003112 1.8e-09 65.1 40 57.5
Gohir.A03G021466 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.8e-09 65.1 40 60.0
Gohir.D03G147300 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.8e-09 65.1 40 60.0
Gorai.003G154800 Gossypium raimondii HOM05D002778 ORTHO05D003112 1.8e-09 65.1 40 60.0
Nn8g40694 Nelumbo nucifera HOM05D002778 ORTHO05D003112 1.8e-09 65.1 40 62.5
Potri.018G140500 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.8e-09 65.1 40 60.0
THA.LOC104811766 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 1.8e-09 65.1 39 64.1
THA.LOC104813502 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 1.8e-09 65.1 39 61.5
BolC3t13955H Brassica oleracea HOM05D002778 ORTHO05D003112 2.4e-09 64.7 39 61.5
PSO063G0977 Papaver somniferum HOM05D002778 ORTHO05D003112 2.4e-09 64.7 40 55.0
Lalb_Chr23g0276751 Lupinus albus HOM05D002778 ORTHO05D003112 3.1e-09 64.3 40 60.0
PGR142G4130 Punica granatum HOM05D002778 ORTHO05D003112 4.0e-09 63.9 40 65.0
Medtr2g038220 Medicago truncatula HOM05D002778 ORTHO05D003112 5.3e-09 63.5 40 57.5
TWI31G1116 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 5.3e-09 63.5 40 57.5
Duzib150G0922 Durio zibethinus HOM05D002778 ORTHO05D003112 6.9e-09 63.2 41 61.0
MD16G1246800 Malus domestica HOM05D002778 ORTHO05D003112 6.9e-09 63.2 38 65.8
Potri.006G073400 Populus trichocarpa HOM05D002778 ORTHO05D003112 6.9e-09 63.2 40 57.5
Lj6g0016516 Lotus japonicus HOM05D002778 ORTHO05D003112 9.0e-09 62.8 40 60.0
TPR.G7055 Trifolium pratense HOM05D002778 ORTHO05D003112 1.2e-08 62.4 40 55.0
Lalb_Chr13g0299861 Lupinus albus HOM05D002778 ORTHO05D003112 1.5e-08 62.0 40 55.0
Sopen02g011850 Solanum pennellii HOM05D000288 ORTHO05D003112 1.5e-08 62.0 46 50.0
Manes.06G017900 Manihot esculenta HOM05D002778 ORTHO05D003112 2.0e-08 61.6 39 59.0
Cfa013463 Carpinus fangiana HOM05D002778 ORTHO05D003112 2.6e-08 61.2 40 55.0
Haze_22042 Corylus avellana HOM05D002778 ORTHO05D003112 2.6e-08 61.2 40 55.0
BcaC09g51768 Brassica carinata HOM05D002778 ORTHO05D003112 3.4e-08 60.8 39 59.0
A01p08270 Brassica napus HOM05D002778 ORTHO05D003112 3.4e-08 60.8 39 59.0
BraA01t00772Z Brassica rapa HOM05D002778 ORTHO05D003112 3.4e-08 60.8 39 59.0
CiPaw.07G198400 Carya illinoinensis HOM05D002778 ORTHO05D003112 3.4e-08 60.8 41 58.5
CiPaw.08G031900 Carya illinoinensis HOM05D002778 ORTHO05D003112 3.4e-08 60.8 40 52.5
Gohir.A05G001500 Gossypium hirsutum HOM05D002778 ORTHO05D003112 3.4e-08 60.8 35 62.9
Gohir.D05G001800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 3.4e-08 60.8 35 62.9
Gorai.009G001700 Gossypium raimondii HOM05D002778 ORTHO05D003112 3.4e-08 60.8 35 62.9
THA.LOC104803960 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 4.4e-08 60.5 39 59.0
Aqoxy7G02885 Aquilegia oxysepala HOM05D002778 ORTHO05D003112 7.6e-08 59.7 28 78.6
BcaB03g12624 Brassica carinata HOM05D002778 ORTHO05D003112 7.6e-08 59.7 39 56.4
BcaC09g52196 Brassica carinata HOM05D002778 ORTHO05D003112 7.6e-08 59.7 39 56.4
BcaNung00501 Brassica carinata HOM05D002778 ORTHO05D003112 7.6e-08 59.7 39 56.4
C01p09290 Brassica napus HOM05D002778 ORTHO05D003112 7.6e-08 59.7 39 56.4
C03p89030 Brassica napus HOM05D002778 ORTHO05D003112 7.6e-08 59.7 39 56.4
BolC1t00918H Brassica oleracea HOM05D002778 ORTHO05D003112 7.6e-08 59.7 39 56.4
BcaC01g01200 Brassica carinata HOM05D002778 ORTHO05D003112 9.9e-08 59.3 39 56.4
Carub.0007s1074 Capsella rubella HOM05D002778 ORTHO05D003112 9.9e-08 59.3 39 56.4
Glyma.13G101500 Glycine max HOM05D002778 ORTHO05D003112 1.3e-07 58.9 40 57.5
Glyma.17G058100 Glycine max HOM05D002778 ORTHO05D003112 1.3e-07 58.9 40 57.5
Thecc.09G007700 Theobroma cacao HOM05D002778 ORTHO05D003112 1.3e-07 58.9 40 55.0
CAN.G837.3 Capsicum annuum HOM05D002778 ORTHO05D003112 1.7e-07 58.5 41 56.1
Eucgr.C00097 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.7e-07 58.5 40 52.5
BolC3t21213H Brassica oleracea HOM05D002778 ORTHO05D003112 2.2e-07 58.2 39 53.8
Migut.J00787 Erythranthe guttata HOM05D002778 ORTHO05D003112 2.2e-07 58.2 40 55.0
HanXRQChr10g0308951 Helianthus annuus HOM05D002778 ORTHO05D003112 2.2e-07 58.2 40 57.5
A03p59330 Brassica napus HOM05D002778 ORTHO05D003112 2.9e-07 57.8 39 56.4
BraA03t14990Z Brassica rapa HOM05D002778 ORTHO05D003112 2.9e-07 57.8 39 56.4
Cfa013278 Carpinus fangiana HOM05D002778 ORTHO05D003112 2.9e-07 57.8 32 65.6
Gohir.A05G064000 Gossypium hirsutum HOM05D002778 ORTHO05D003112 2.9e-07 57.8 40 52.5
Gohir.D05G066600 Gossypium hirsutum HOM05D002778 ORTHO05D003112 2.9e-07 57.8 40 52.5
Gorai.009G067400 Gossypium raimondii HOM05D002778 ORTHO05D003112 2.9e-07 57.8 40 52.5
Phvul.009G234900 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 2.9e-07 57.8 37 56.8
Sp7g27720 Schrenkiella parvula HOM05D002778 ORTHO05D003112 2.9e-07 57.8 39 56.4
Zm00001eb181190 Zea mays HOM05D002778 ORTHO05D003112 2.9e-07 57.8 36 63.9
C07p57350 Brassica napus HOM05D002778 ORTHO05D003112 3.8e-07 57.4 39 53.8
BolC7t46204H Brassica oleracea HOM05D002778 ORTHO05D003112 3.8e-07 57.4 39 53.8
Zm00001eb389240 Zea mays HOM05D002778 ORTHO05D003112 4.9e-07 57.0 37 56.8
AL7G22340 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 6.4e-07 56.6 39 53.8
AT4G29905 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 6.4e-07 56.6 39 53.8
CARHR237810 Cardamine hirsuta HOM05D002778 ORTHO05D003112 6.4e-07 56.6 39 53.8
Ca_15657_v3 Cicer arietinum L. HOM05D000122 ORTHO05D000139 6.4e-07 56.6 35 57.1
Glyma.09G060700 Glycine max HOM05D002778 ORTHO05D003112 6.4e-07 56.6 40 52.5
Lalb_Chr12g0199661 Lupinus albus HOM05D002778 ORTHO05D003112 6.4e-07 56.6 40 55.0
THA.LOC104814646 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 6.4e-07 56.6 39 56.4
CANSAT78G1832 Cannabis sativa HOM05D002778 ORTHO05D003112 8.4e-07 56.2 40 57.5
Lsat_1_v5_gn_5_83800 Lactuca sativa HOM05D002778 ORTHO05D003112 8.4e-07 56.2 40 55.0
CANSAT35G1850 Cannabis sativa HOM05D002778 ORTHO05D003112 1.1e-06 55.8 40 52.5
CAN.G1185.1 Capsicum annuum HOM05D002778 ORTHO05D003112 1.4e-06 55.5 39 56.4
Solyc07g008430.2 Solanum lycopersicum HOM05D002778 ORTHO05D003112 1.4e-06 55.5 36 52.8
Sopen07g004330 Solanum pennellii HOM05D002778 ORTHO05D003112 1.4e-06 55.5 36 52.8
PGSC0003DMG400021028 Solanum tuberosum HOM05D002778 ORTHO05D003112 1.4e-06 55.5 39 56.4
THA.LOC109116734 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 1.4e-06 55.5 40 65.0
BcaB05g22320 Brassica carinata HOM05D002778 ORTHO05D003112 1.9e-06 55.1 39 53.8
Glyma.15G167300 Glycine max HOM05D002778 ORTHO05D003112 1.9e-06 55.1 40 52.5
Nitab4.5_0006188g0010 Nicotiana tabacum HOM05D002778 ORTHO05D003112 1.9e-06 55.1 41 58.5
Nitab4.5_0007857g0010 Nicotiana tabacum HOM05D002778 ORTHO05D003112 1.9e-06 55.1 42 59.5
Lj4g0026496 Lotus japonicus HOM05D002778 ORTHO05D003112 2.4e-06 54.7 40 52.5
Os06g0660400 Oryza sativa ssp. japonica HOM05D002778 ORTHO05D003112 2.4e-06 54.7 34 55.9
Lalb_Chr07g0180721 Lupinus albus HOM05D002778 ORTHO05D003112 3.2e-06 54.3 38 52.6
QL02p047015 Quercus lobata HOM05D002778 ORTHO05D003112 3.2e-06 54.3 38 55.3
Ca_21261_v3 Cicer arietinum L. HOM05D002778 ORTHO05D003112 4.2e-06 53.9 40 52.5
Manes.04G056300 Manihot esculenta HOM05D002778 ORTHO05D003112 4.2e-06 53.9 33 54.5
PGSC0003DMG400021029 Solanum tuberosum HOM05D002778 ORTHO05D003112 4.2e-06 53.9 36 50.0
ClCG06G013690 Citrullus lanatus HOM05D002778 ORTHO05D003112 5.4e-06 53.5 40 52.5
MD13G1240400 Malus domestica HOM05D002778 ORTHO05D003112 5.4e-06 53.5 38 55.3
Manes.06G018100 Manihot esculenta HOM05D002778 ORTHO05D003112 5.4e-06 53.5 40 52.5
Medtr4g127190 Medicago truncatula HOM05D002778 ORTHO05D003112 7.1e-06 53.1 36 55.6
Sopen07g004320 Solanum pennellii HOM05D002778 ORTHO05D003112 7.1e-06 53.1 37 56.8
MELO3C017419.2 Cucumis melo HOM05D002778 ORTHO05D003112 9.3e-06 52.8 40 50.0
CsaV3_1G031970 Cucumis sativus L. HOM05D002778 ORTHO05D003112 9.3e-06 52.8 40 50.0
TPR.G5389 Trifolium pratense HOM05D002778 ORTHO05D003112 9.3e-06 52.8 40 52.5


User provided reference genes

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