Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 0.0e+00 1120.1 718 100.0
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 9.3e-120 435.3 745 55.8
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 3.3e-109 400.2 746 49.6
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 6.9e-107 392.5 676 49.7
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 4.5e-106 389.8 746 49.6
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.1e-104 385.2 742 50.0
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 8.0e-103 379.0 742 47.2
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.0e-102 377.1 746 46.9
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.5e-101 374.8 746 51.9
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 4.4e-101 373.2 746 51.7
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.7e-100 371.3 782 44.1
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 4.5e-98 363.2 746 51.9
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 4.5e-98 363.2 746 49.5
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 7.7e-98 362.5 746 51.3
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.3e-97 361.7 739 51.4
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 2.2e-97 360.9 746 52.0
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.2e-97 360.9 727 51.4
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 6.5e-97 359.4 746 50.9
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 8.5e-97 359.0 746 52.0
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 8.5e-97 359.0 668 49.4
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 8.5e-97 359.0 744 51.9
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.1e-96 358.6 734 52.3
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.5e-96 358.2 674 52.2
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.5e-96 358.2 749 51.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 9.4e-96 355.5 664 55.0
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.2e-95 355.1 746 48.7
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.7e-95 354.0 746 51.9
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 4.7e-95 353.2 694 45.0
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.7e-95 353.2 749 49.3
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.4e-94 351.7 742 50.4
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.8e-94 351.3 757 49.8
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.3e-94 350.9 747 50.7
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 3.0e-94 350.5 665 55.2
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 3.0e-94 350.5 664 54.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 5.2e-94 349.7 745 51.0
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 5.2e-94 349.7 661 52.6
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 6.7e-94 349.4 780 48.8
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.2e-93 348.6 746 50.8
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.5e-93 348.2 717 46.7
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 2.0e-93 347.8 746 50.5
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 3.3e-93 347.1 654 50.3
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 4.4e-93 346.7 765 47.2
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 5.7e-93 346.3 746 50.8
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.5e-93 345.9 745 50.9
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 9.7e-93 345.5 756 39.4
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.2e-92 344.4 753 51.1
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.2e-92 344.4 746 50.1
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.8e-92 344.0 755 50.2
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 3.7e-92 343.6 746 50.3
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.7e-92 343.6 742 50.3
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 6.3e-92 342.8 743 45.5
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 8.2e-92 342.4 746 50.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 8.2e-92 342.4 746 50.3
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 8.2e-92 342.4 756 50.7
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.8e-91 341.3 686 48.1
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 2.4e-91 340.9 742 51.3
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 1.2e-90 338.6 746 46.9
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.2e-90 338.6 747 49.5
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.6e-90 338.2 665 52.8
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.0e-90 337.8 746 49.7
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.0e-90 337.8 707 46.3
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 2.7e-90 337.4 745 50.5
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.7e-90 337.4 742 50.0
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 3.5e-90 337.0 745 49.5
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 3.5e-90 337.0 752 40.7
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.5e-90 337.0 743 50.7
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 4.5e-90 336.7 745 47.1
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 4.5e-90 336.7 639 54.8
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 5.9e-90 336.3 743 44.8
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 5.9e-90 336.3 743 44.8
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 7.7e-90 335.9 740 49.5
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.0e-89 335.5 745 50.5
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.2e-89 334.3 746 47.9
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 5.0e-89 333.2 746 44.1
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 8.5e-89 332.4 661 47.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.1e-88 332.0 746 47.1
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.5e-88 331.6 665 51.9
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 1.5e-88 331.6 732 49.7
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.5e-88 330.9 665 55.0
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 2.5e-88 330.9 745 47.4
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 2.5e-88 330.9 745 47.4
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 3.2e-88 330.5 736 50.8
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.2e-88 330.5 742 49.3
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 5.5e-88 329.7 746 50.1
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 7.2e-88 329.3 741 49.4
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.1e-87 327.8 754 43.1
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.7e-87 327.4 757 45.2
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.4e-86 325.1 750 49.3
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.3e-86 324.3 746 49.9
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 2.3e-86 324.3 737 49.4
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 1.2e-85 322.0 746 49.3
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.0e-85 321.2 723 44.1
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.0e-85 321.2 725 50.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.6e-85 320.9 743 48.9
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 3.4e-85 320.5 811 44.8
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 4.4e-85 320.1 735 49.3
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 4.4e-85 320.1 674 47.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 5.7e-85 319.7 747 46.5
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 4.8e-84 316.6 746 49.7
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-83 315.1 667 52.6
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.4e-83 315.1 747 48.7
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.8e-83 314.7 747 48.6
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.8e-83 314.7 745 49.3
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.1e-83 313.9 745 49.3
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 9.1e-83 312.4 759 48.4
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-82 312.0 737 46.8
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.2e-82 312.0 698 43.1
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.6e-82 311.6 749 49.1
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 2.0e-82 311.2 756 47.9
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.8e-81 307.0 743 48.2
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.0e-81 306.6 681 46.5
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 5.0e-81 306.6 673 50.2
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.1e-80 305.4 746 47.9
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.9e-80 304.7 661 52.2
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.2e-80 303.5 746 46.8
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 5.5e-80 303.1 743 48.9
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 5.5e-80 303.1 667 50.2
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 5.5e-80 303.1 747 48.3
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.6e-79 301.6 759 47.3
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 6.1e-79 299.7 748 48.0
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 1.8e-78 298.1 747 47.5
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.8e-78 298.1 747 47.5
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 2.3e-78 297.7 747 47.5
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.3e-78 297.7 747 47.5
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.3e-78 297.7 747 47.5
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.3e-78 297.7 664 51.7
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 3.4e-77 293.9 745 47.9
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 4.4e-77 293.5 734 46.6
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 5.7e-77 293.1 747 43.8
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.3e-76 292.0 737 45.7
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.7e-76 291.6 755 46.9
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 4.9e-76 290.0 741 47.9
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 4.1e-75 287.0 747 43.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 7.8e-74 282.7 688 47.2
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.0e-73 282.3 755 46.8
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 3.8e-73 280.4 747 47.0
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.9e-72 278.1 576 55.9
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.9e-72 278.1 687 45.4
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 4.7e-71 273.5 662 47.4
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 4.9e-68 263.5 697 42.2
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 8.3e-68 262.7 581 51.8
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 7.0e-67 259.6 673 48.6
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 6.6e-65 253.1 538 53.7
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 2.8e-63 247.7 696 43.0
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.6e-58 231.9 580 45.0
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 8.6e-57 226.1 584 44.3
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.9e-56 224.9 685 44.4
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.9e-56 224.9 656 29.9
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 7.3e-56 223.0 531 52.4
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 4.7e-55 220.3 644 42.1
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.3e-54 218.0 707 32.8
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-53 213.0 434 38.9
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.7e-50 204.5 295 45.1
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.5e-48 198.0 651 44.5
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.4e-46 192.2 374 35.6
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.8e-46 191.8 647 47.1
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.0e-45 188.3 141 65.2
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.4e-43 182.2 589 43.5
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.0e-41 174.5 592 35.6
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 7.6e-37 159.8 338 34.0
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 2.2e-36 158.3 187 49.7
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.9e-36 157.9 253 38.3
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 7.8e-34 149.8 521 49.1
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.7e-33 148.7 209 44.0
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.3e-33 148.3 263 36.1
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.8e-30 138.7 318 46.2
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 3.5e-26 124.4 189 40.7
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 4.6e-18 97.4 110 53.6
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 8.7e-17 93.2 129 43.4
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 2.0e-13 82.0 120 41.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.5e-08 65.1 66 57.6
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.2e-07 62.0 60 53.3
Lj1g0024028 Lotus japonicus HOM05D000005 ORTHO05D000012 4.8e-07 60.8 264 27.7


User provided reference genes

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