Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009950 Simmondsia chinensis HOM05D007141 ORTHO05D008975 7.1e-39 163.3 74 100.0
Gohir.D07G020900 Gossypium hirsutum HOM05D007141 ORTHO05D008975 6.4e-24 113.6 57 84.2
Gorai.001G021700 Gossypium raimondii HOM05D007141 ORTHO05D008975 6.4e-24 113.6 57 84.2
Gohir.A07G021200 Gossypium hirsutum HOM05D007141 ORTHO05D008975 2.4e-23 111.7 57 82.5
Cc08_g11030 Coffea canephora HOM05D007141 ORTHO05D008975 1.6e-22 109.0 58 77.6
Thecc.09G058700 Theobroma cacao HOM05D007141 ORTHO05D008975 1.6e-22 109.0 55 81.8
Eucgr.C03070 Eucalyptus grandis HOM05D007141 ORTHO05D008975 2.1e-22 108.6 66 75.8
Actinidia25707 Actinidia chinensis HOM05D007141 ORTHO05D008975 3.5e-22 107.8 58 79.3
SalBow4G0322 Salvia bowleyana HOM05D007141 ORTHO05D008975 3.5e-22 107.8 59 79.7
Hund03309 Selenicereus undatus HOM05D007141 ORTHO05D008975 4.6e-22 107.5 58 77.6
C03p86820 Brassica napus HOM05D007141 ORTHO05D008975 6.0e-22 107.1 67 71.6
BraA08t33728Z Brassica rapa HOM05D007141 ORTHO05D008975 6.0e-22 107.1 67 71.6
Ciclev10010008m.g Citrus clementina HOM05D007141 ORTHO05D008975 6.0e-22 107.1 57 82.5
Dinv12459 Davidia involucrata HOM05D007141 ORTHO05D008975 6.0e-22 107.1 57 78.9
ECA234G1667 Erigeron canadensis HOM05D007141 ORTHO05D008975 6.0e-22 107.1 67 71.6
CSS0014882 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 1.0e-21 106.3 57 77.2
HanXRQChr10g0309781 Helianthus annuus HOM05D007141 ORTHO05D008975 1.0e-21 106.3 64 70.3
Hma1.2p1_0644F.1_g194800 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 1.0e-21 106.3 56 78.6
Hma1.2p1_1832F.1_g304585 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 1.0e-21 106.3 56 78.6
A08p17770 Brassica napus HOM05D007141 ORTHO05D008975 1.7e-21 105.5 67 70.1
MELO3C011470.2 Cucumis melo HOM05D007141 ORTHO05D008975 1.7e-21 105.5 57 77.2
Duzib150G0643 Durio zibethinus HOM05D007141 ORTHO05D008975 1.7e-21 105.5 55 78.2
Rhsim05G0069200 Rhododendron simsii HOM05D007141 ORTHO05D008975 1.7e-21 105.5 60 78.3
AL7G18460 Arabidopsis lyrata HOM05D007141 ORTHO05D008975 2.3e-21 105.1 55 78.2
AT4G33100 Arabidopsis thaliana HOM05D007141 ORTHO05D008975 2.3e-21 105.1 55 78.2
Carub.0007s0735 Capsella rubella HOM05D007141 ORTHO05D008975 2.3e-21 105.1 55 78.2
GSVIVG01035422001 Vitis vinifera HOM05D007141 ORTHO05D008975 2.3e-21 105.1 67 74.6
ClCG08G009990 Citrullus lanatus HOM05D000426 ORTHO05D000328 3.0e-21 104.8 58 74.1
CSS0018983 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 3.9e-21 104.4 57 75.4
Potri.006G224400 Populus trichocarpa HOM05D007141 ORTHO05D008975 3.9e-21 104.4 58 77.6
CsaV3_6G032120 Cucumis sativus L. HOM05D007141 ORTHO05D008975 5.1e-21 104.0 57 75.4
Nitab4.5_0002797g0020 Nicotiana tabacum HOM05D007141 ORTHO05D008975 6.6e-21 103.6 59 76.3
BolC3t20976H Brassica oleracea HOM05D007141 ORTHO05D008975 8.7e-21 103.2 55 76.4
Eucgr.L02859 Eucalyptus grandis HOM05D007141 ORTHO05D008975 8.7e-21 103.2 63 76.2
MD08G1066900 Malus domestica HOM05D007141 ORTHO05D008975 8.7e-21 103.2 52 84.6
Oeu034195.1 Olea europaea HOM05D007141 ORTHO05D008975 8.7e-21 103.2 59 72.9
Sabra06G0173500 Salix brachista HOM05D007141 ORTHO05D008975 8.7e-21 103.2 58 75.9
Atru.chr7.1922 Acer truncatum HOM05D007141 ORTHO05D008975 1.1e-20 102.8 50 84.0
Prupe.1G407800 Prunus persica HOM05D007141 ORTHO05D008975 1.1e-20 102.8 55 78.2
Migut.A00104 Erythranthe guttata HOM05D007141 ORTHO05D008975 1.5e-20 102.4 59 74.6
Lsat_1_v5_gn_5_78660 Lactuca sativa HOM05D007141 ORTHO05D008975 1.5e-20 102.4 68 69.1
CARHR241130 Cardamine hirsuta HOM05D007141 ORTHO05D008975 1.9e-20 102.1 48 85.4
Manes.16G083100 Manihot esculenta HOM05D007141 ORTHO05D008975 1.9e-20 102.1 58 79.3
RcHm_v2.0_Chr6g0311391 Rosa chinensis HOM05D007141 ORTHO05D008975 1.9e-20 102.1 60 75.0
RcHm_v2.0_Chr7g0222241 Rosa chinensis HOM05D007141 ORTHO05D008975 2.5e-20 101.7 61 73.8
CAN.G1181.10 Capsicum annuum HOM05D007141 ORTHO05D008975 3.3e-20 101.3 59 74.6
Sp7g30850 Schrenkiella parvula HOM05D007141 ORTHO05D008975 3.3e-20 101.3 55 74.5
Thhalv10026676m.g Eutrema salsugineum HOM05D007141 ORTHO05D008975 4.3e-20 100.9 55 74.5
PSO832G0110 Papaver somniferum HOM05D007141 ORTHO05D008975 4.3e-20 100.9 55 72.7
Sed0026589 Sechium edule HOM05D007141 ORTHO05D008975 4.3e-20 100.9 58 70.7
vmacro17441 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 4.3e-20 100.9 58 72.4
vmacro22570 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 4.3e-20 100.9 58 72.4
AUR62009107 Chenopodium quinoa HOM05D007141 ORTHO05D008975 5.6e-20 100.5 62 72.6
EL10Ac2g03813 Beta vulgaris HOM05D007141 ORTHO05D008975 7.3e-20 100.1 58 72.4
Aa31LG1G7350 Aethionema arabicum HOM05D007141 ORTHO05D008975 9.6e-20 99.8 58 74.1
MD08G1067500 Malus domestica HOM05D007141 ORTHO05D008975 9.6e-20 99.8 55 76.4
MD09G1070200 Malus domestica HOM05D007141 ORTHO05D008975 9.6e-20 99.8 55 76.4
TWI34G1430 Tripterygium wilfordii HOM05D007141 ORTHO05D008975 9.6e-20 99.8 52 80.8
A01p05100 Brassica napus HOM05D007141 ORTHO05D008975 1.3e-19 99.4 67 67.2
BraA01t00493Z Brassica rapa HOM05D007141 ORTHO05D008975 1.3e-19 99.4 67 67.2
FAN15G0931 Fragaria x ananassa HOM05D007141 ORTHO05D008975 1.3e-19 99.4 61 73.8
Glyma.06G053600 Glycine max HOM05D007141 ORTHO05D008975 1.3e-19 99.4 56 75.0
BcaC09g52107 Brassica carinata HOM05D007141 ORTHO05D008975 1.6e-19 99.0 55 76.4
C01p05580 Brassica napus HOM05D007141 ORTHO05D008975 1.6e-19 99.0 55 76.4
FAN24G3331 Fragaria x ananassa HOM05D007141 ORTHO05D008975 1.6e-19 99.0 61 73.8
FAN27G0109 Fragaria x ananassa HOM05D007141 ORTHO05D008975 1.6e-19 99.0 61 73.8
Ah.10g034080 Amaranthus hybridus HOM05D007141 ORTHO05D008975 2.8e-19 98.2 68 66.2
FvH4_2g31430 Fragaria vesca HOM05D007141 ORTHO05D008975 4.8e-19 97.4 61 73.8
Solyc08g062620.3 Solanum lycopersicum HOM05D007141 ORTHO05D008975 4.8e-19 97.4 59 69.5
Sopen08g018140 Solanum pennellii HOM05D007141 ORTHO05D008975 4.8e-19 97.4 59 69.5
PGSC0003DMG400008211 Solanum tuberosum HOM05D007141 ORTHO05D008975 4.8e-19 97.4 59 69.5
QL02p000427 Quercus lobata HOM05D007141 ORTHO05D008975 8.1e-19 96.7 46 87.0
Psat5g035560 Pisum sativum HOM05D007141 ORTHO05D008975 1.1e-18 96.3 54 75.9
Atru.BG.111.p Acer truncatum HOM05D007141 ORTHO05D008975 1.4e-18 95.9 51 78.4
arahy.Tifrunner.gnm1.ann1.L1P6F7 Arachis hypogaea HOM05D007141 ORTHO05D008975 1.4e-18 95.9 58 69.0
BolC1t00538H Brassica oleracea HOM05D007141 ORTHO05D008975 1.8e-18 95.5 55 72.7
CANSAT25G2947 Cannabis sativa HOM05D007141 ORTHO05D008975 1.8e-18 95.5 64 64.1
CiPaw.15G035700 Carya illinoinensis HOM05D007141 ORTHO05D008975 1.8e-18 95.5 69 62.3
DCAR_003142 Daucus carota HOM05D007141 ORTHO05D008975 1.8e-18 95.5 60 68.3
ATR0051G046 Amborella trichopoda HOM05D007141 ORTHO05D008975 2.4e-18 95.1 57 68.4
CDE07G1700 Ceratophyllum demersum HOM05D007141 ORTHO05D008975 2.4e-18 95.1 51 76.5
Haze_18140 Corylus avellana HOM05D007141 ORTHO05D008975 2.4e-18 95.1 58 72.4
BcaC09g52111 Brassica carinata HOM05D007141 ORTHO05D008975 3.1e-18 94.7 55 72.7
Phvul.009G079400 Phaseolus vulgaris HOM05D007141 ORTHO05D008975 3.1e-18 94.7 56 73.2
VMungo1309G2876 Vigna mungo HOM05D007141 ORTHO05D008975 4.0e-18 94.4 56 71.4
Medtr3g104730 Medicago truncatula HOM05D007141 ORTHO05D008975 6.9e-18 93.6 58 69.0
CDE06G2239 Ceratophyllum demersum HOM05D007141 ORTHO05D008975 9.0e-18 93.2 51 76.5
unitig_88.g27673 Utricularia gibba HOM05D007141 ORTHO05D008975 1.2e-17 92.8 59 67.8
TPR.G3578 Trifolium pratense HOM05D007141 ORTHO05D008975 4.5e-17 90.9 50 76.0
Lalb_Chr08g0244921 Lupinus albus HOM05D007141 ORTHO05D008975 2.9e-16 88.2 44 77.3
Lj1g0005823 Lotus japonicus HOM05D007141 ORTHO05D008975 4.9e-16 87.4 57 68.4
unitig_0.g2555 Utricularia gibba HOM05D007141 ORTHO05D008975 1.9e-15 85.5 59 59.3
HPP92_022917 Vanilla planifolia HOM05D007141 ORTHO05D008975 7.1e-15 83.6 47 74.5
HPP92_022928 Vanilla planifolia HOM05D007141 ORTHO05D008975 7.1e-15 83.6 47 74.5
SEGI_38617 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 1.6e-14 82.4 46 71.7
Zm00001eb310860 Zea mays HOM05D007141 ORTHO05D008975 6.0e-14 80.5 60 53.3
Os09g0361700 Oryza sativa ssp. japonica HOM05D007141 ORTHO05D008975 1.8e-13 79.0 41 70.7
MBI11_g07534_MAGBIO Magnolia biondii HOM05D007141 ORTHO05D008975 2.3e-13 78.6 79 50.6
Mapoly0108s0048 Marchantia polymorpha HOM05D007141 ORTHO05D008975 2.5e-12 75.1 50 60.0
THA.LOC104819900 Tarenaya hassleriana HOM05D007141 ORTHO05D008975 5.6e-12 73.9 77 50.6
SEGI_00789 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 7.4e-12 73.6 44 68.2
AagrBONN_evm.TU.Sc2ySwM_117.1198 Anthoceros agrestis HOM05D007141 ORTHO05D008975 1.3e-08 62.8 41 56.1
Peaxi162Scf00070g00023 Petunia axillaris HOM05D007141 ORTHO05D008975 2.9e-08 61.6 40 67.5
Atru.BG.143.p Acer truncatum HOM05D007141 ORTHO05D008975 6.5e-08 60.5 30 83.3
CAN.G11.20 Capsicum annuum HOM05D007141 ORTHO05D008975 8.4e-08 60.1 31 74.2
AUR62020564 Chenopodium quinoa HOM05D007141 ORTHO05D008975 1.1e-07 59.7 28 78.6
Atru.BG.284.p Acer truncatum HOM05D007141 ORTHO05D008975 1.4e-07 59.3 30 83.3
SMO361G0717 Selaginella moellendorffii HOM05D007141 ORTHO05D008975 5.5e-07 57.4 47 51.1
AUR62020560 Chenopodium quinoa HOM05D007141 ORTHO05D008975 2.1e-06 55.5 27 77.8


User provided reference genes

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