Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.1e-123 446.8 253 100.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 5.0e-60 235.3 259 57.1
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.2e-56 224.2 257 58.0
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.5e-56 223.8 258 52.3
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 4.4e-56 222.2 252 54.0
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.3e-55 220.7 216 61.1
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.8e-55 219.5 253 56.1
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 5.4e-54 215.3 257 52.1
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 7.0e-54 214.9 253 52.2
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 2.0e-53 213.4 261 51.3
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 2.7e-53 213.0 254 52.8
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 3.5e-53 212.6 259 50.6
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.5e-53 212.6 255 54.5
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 3.5e-53 212.6 258 52.3
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.0e-52 211.1 259 56.0
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.3e-52 210.7 259 52.1
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 1.3e-52 210.7 256 55.1
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.7e-52 210.3 255 53.7
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 5.0e-52 208.8 265 51.3
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 8.6e-52 208.0 259 50.6
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.5e-51 207.2 254 53.9
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 2.5e-51 206.5 253 50.2
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 3.3e-51 206.1 254 49.2
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 5.5e-51 205.3 263 53.6
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 7.2e-51 204.9 252 49.6
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 7.2e-51 204.9 293 46.8
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.2e-50 204.1 175 60.6
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.2e-50 204.1 253 52.2
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.2e-50 204.1 253 53.4
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 2.1e-50 203.4 253 52.2
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.1e-50 203.4 246 52.8
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 3.6e-50 202.6 257 49.8
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 3.6e-50 202.6 250 52.4
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 4.7e-50 202.2 257 47.1
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 8.0e-50 201.4 264 52.3
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 8.0e-50 201.4 259 49.0
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.0e-49 201.1 266 49.6
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.4e-49 200.7 253 51.4
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.4e-49 200.7 260 51.2
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.8e-49 200.3 260 46.5
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.8e-49 200.3 248 52.0
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 2.3e-49 199.9 254 53.5
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 3.0e-49 199.5 262 53.8
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 5.2e-49 198.7 177 59.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 5.2e-49 198.7 256 52.7
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 5.2e-49 198.7 260 51.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.9e-49 198.0 250 54.4
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.5e-48 197.2 265 52.1
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 2.0e-48 196.8 266 54.1
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.0e-48 196.8 250 51.2
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.0e-48 196.8 250 51.2
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 2.0e-48 196.8 261 46.4
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.0e-48 196.8 257 51.8
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 2.6e-48 196.4 266 48.5
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 4.4e-48 195.7 261 49.0
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 5.7e-48 195.3 257 45.9
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.5e-48 194.9 262 49.2
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 7.5e-48 194.9 249 53.8
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 9.8e-48 194.5 271 51.3
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.8e-47 193.0 262 49.2
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.9e-47 192.2 257 47.1
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 6.3e-47 191.8 277 48.7
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 6.3e-47 191.8 250 43.6
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-46 191.0 260 44.6
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.1e-46 191.0 257 46.7
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.8e-46 190.3 253 48.6
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.4e-46 189.9 262 49.2
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 2.4e-46 189.9 260 46.2
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.1e-46 189.1 253 45.5
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 5.4e-46 188.7 251 51.4
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 5.4e-46 188.7 320 41.9
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 7.0e-46 188.3 261 50.2
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 9.2e-46 188.0 232 52.6
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 9.2e-46 188.0 259 45.2
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.2e-45 187.6 247 49.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.2e-45 187.6 274 50.0
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.2e-45 187.6 260 45.0
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.6e-45 187.2 267 46.8
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.6e-45 187.2 267 47.9
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.6e-45 187.2 267 46.8
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.6e-45 187.2 277 43.7
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.0e-45 186.8 263 46.8
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 4.5e-45 185.7 263 49.8
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.5e-45 185.7 263 48.7
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 5.9e-45 185.3 262 49.6
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 5.9e-45 185.3 177 53.1
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.7e-44 183.7 262 48.9
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.8e-44 182.6 260 46.5
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 5.0e-44 182.2 249 51.4
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 6.6e-44 181.8 266 47.4
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 8.6e-44 181.4 249 48.2
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.1e-43 181.0 186 61.8
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.9e-43 180.3 249 51.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 2.5e-43 179.9 258 50.4
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 4.3e-43 179.1 256 45.7
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 9.5e-43 177.9 261 47.5
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.6e-42 177.2 252 48.0
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.6e-42 177.2 258 45.0
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 2.8e-42 176.4 253 46.2
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 8.0e-42 174.9 266 48.9
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.4e-41 174.1 249 44.2
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 2.3e-41 173.3 269 46.5
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 3.0e-41 172.9 170 52.9
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 8.9e-41 171.4 260 45.0
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 2.0e-40 170.2 269 45.7
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-40 170.2 163 54.6
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 3.4e-40 169.5 159 56.0
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 3.4e-40 169.5 259 47.1
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.3e-39 167.5 219 47.0
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.3e-39 167.5 164 56.1
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 3.7e-39 166.0 172 58.1
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 8.3e-39 164.9 249 43.8
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-38 164.1 268 43.7
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.4e-38 164.1 373 39.9
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.8e-38 163.7 274 40.9
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.1e-38 162.5 265 43.8
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-37 161.0 169 53.8
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 2.0e-37 160.2 242 46.3
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.0e-36 157.9 233 43.3
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.7e-36 157.1 372 34.4
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 3.9e-36 156.0 178 51.7
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.3e-35 152.9 152 55.9
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 1.6e-34 150.6 167 50.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 3.4e-32 142.9 260 40.4
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.9e-31 139.8 249 39.0
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 6.6e-28 128.6 296 32.4
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 8.6e-28 128.3 137 49.6
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.1e-27 127.9 92 68.5
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 2.1e-26 123.6 215 38.6
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 6.2e-26 122.1 145 49.7
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 9.2e-22 108.2 247 39.3
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.7e-21 106.7 246 38.2
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 6.0e-21 105.5 124 62.9
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 6.6e-20 102.1 195 37.9
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 4.7e-18 95.9 67 71.6
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 8.1e-18 95.1 164 39.6
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.2e-16 91.3 92 50.0
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.3e-15 87.8 129 39.5
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.8e-15 86.3 60 63.3
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 8.4e-15 85.1 90 51.1
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 7.1e-14 82.0 91 48.4
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.5e-11 73.6 127 52.8
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 8.1e-10 68.6 53 64.2
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.2e-08 64.7 124 45.2
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 9.9e-08 61.6 41 63.4
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 9.9e-08 61.6 41 63.4
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 4.2e-06 56.2 90 34.4
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 4.2e-06 56.2 127 38.6


User provided reference genes

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