Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.3e-44 180.6 91 100.0
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 6.7e-39 163.7 124 73.4
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 9.0e-28 126.7 88 67.0
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 4.5e-27 124.4 85 65.9
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 1.0e-26 123.2 91 63.7
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.4e-25 119.4 87 63.2
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.9e-25 119.0 84 65.5
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.9e-25 119.0 91 61.5
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 3.2e-25 118.2 88 64.8
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 4.2e-25 117.9 84 64.3
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 5.5e-25 117.5 91 61.5
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 7.1e-25 117.1 91 61.5
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 9.3e-25 116.7 84 63.1
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 9.3e-25 116.7 91 61.5
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 9.3e-25 116.7 91 61.5
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 3.5e-24 114.8 91 63.7
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 6.0e-24 114.0 91 63.7
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 6.0e-24 114.0 88 65.9
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 7.9e-24 113.6 88 64.8
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 1.0e-23 113.2 91 60.4
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 1.3e-23 112.8 90 63.3
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.3e-23 112.1 79 67.1
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 2.3e-23 112.1 89 64.0
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 3.9e-23 111.3 91 62.6
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 3.9e-23 111.3 80 70.0
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 5.1e-23 110.9 91 60.4
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.1e-23 110.9 88 65.9
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.1e-23 110.9 90 64.4
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 5.1e-23 110.9 90 64.4
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.1e-22 109.8 88 61.4
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 1.1e-22 109.8 88 68.2
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.9e-22 109.0 88 61.4
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 2.5e-22 108.6 91 60.4
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 3.3e-22 108.2 79 64.6
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 3.3e-22 108.2 88 63.6
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 4.3e-22 107.8 88 62.5
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 5.7e-22 107.5 81 64.2
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 9.7e-22 106.7 88 63.6
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 2.2e-21 105.5 91 59.3
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 2.8e-21 105.1 88 61.4
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 3.7e-21 104.8 91 60.4
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 8.2e-21 103.6 73 67.1
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.1e-20 103.2 90 58.9
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.1e-20 103.2 84 56.0
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.1e-20 103.2 90 58.9
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.1e-20 103.2 90 57.8
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 2.4e-20 102.1 69 69.6
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.4e-20 102.1 73 64.4
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 3.1e-20 101.7 81 64.2
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 3.1e-20 101.7 88 62.5
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 5.3e-20 100.9 90 56.7
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.2e-19 99.8 79 62.0
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.0e-19 99.0 73 61.6
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 2.0e-19 99.0 87 58.6
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.6e-19 98.6 84 59.5
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 2.6e-19 98.6 74 67.6
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 2.6e-19 98.6 94 55.3
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 4.5e-19 97.8 73 60.3
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 4.5e-19 97.8 78 62.8
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 4.5e-19 97.8 78 62.8
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 5.9e-19 97.4 78 61.5
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 5.9e-19 97.4 74 66.2
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 5.9e-19 97.4 74 66.2
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 5.9e-19 97.4 74 66.2
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 7.6e-19 97.1 76 64.5
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 7.6e-19 97.1 76 63.2
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.0e-18 96.7 68 64.7
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.3e-18 96.3 74 63.5
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.7e-18 95.9 91 53.8
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 1.7e-18 95.9 69 68.1
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.7e-18 95.9 86 57.0
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 2.2e-18 95.5 84 57.1
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.9e-18 95.1 73 58.9
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 5.0e-18 94.4 77 57.1
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 6.5e-18 94.0 88 54.5
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 8.5e-18 93.6 69 69.6
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 1.1e-17 93.2 69 66.7
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.1e-17 93.2 91 53.8
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.4e-17 92.8 88 58.0
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.9e-17 92.4 76 61.8
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 1.9e-17 92.4 74 63.5
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 3.2e-17 91.7 74 63.5
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 4.2e-17 91.3 75 61.3
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 5.5e-17 90.9 91 49.5
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 9.3e-17 90.1 69 66.7
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.2e-16 89.7 71 64.8
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 2.7e-16 88.6 73 57.5
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 3.6e-16 88.2 79 53.2
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 6.1e-16 87.4 68 61.8
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 6.1e-16 87.4 68 60.3
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 1.0e-15 86.7 68 60.3
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 1.0e-15 86.7 69 66.7
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 1.4e-15 86.3 71 57.7
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 1.8e-15 85.9 83 53.0
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 2.3e-15 85.5 71 57.7
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 3.9e-15 84.7 55 72.7
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 8.8e-15 83.6 88 52.3
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.9e-14 82.4 67 65.7
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.5e-14 82.0 70 55.7
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 3.3e-14 81.6 73 56.2
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 5.7e-14 80.9 67 65.7
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 7.4e-14 80.5 67 64.2
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.3e-13 79.7 170 31.8
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.7e-13 79.3 47 83.0
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 4.8e-13 77.8 70 54.3
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 1.0e-10 70.1 48 66.7
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 1.8e-07 59.3 44 63.6
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 8.8e-07 57.0 31 83.9
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.5e-06 56.2 66 40.9
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 9.7e-06 53.5 91 38.5


User provided reference genes

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