Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 4.5e-102 374.8 216 100.0
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 4.3e-60 235.3 205 58.5
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.4e-58 230.3 206 58.3
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 2.3e-58 229.6 204 57.8
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 2.3e-58 229.6 209 60.8
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 4.0e-58 228.8 203 57.1
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 6.4e-56 221.5 209 56.5
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.1e-55 220.7 209 56.5
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.4e-55 219.5 209 56.5
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 3.2e-55 219.2 208 56.7
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 4.6e-54 215.3 200 57.5
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 2.3e-53 213.0 209 54.5
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 5.1e-53 211.8 209 55.0
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 6.6e-53 211.5 213 54.0
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.1e-52 210.7 209 56.5
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 1.5e-52 210.3 209 56.5
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.5e-52 210.3 209 56.9
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 4.3e-52 208.8 209 56.0
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 4.3e-52 208.8 208 55.3
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 5.6e-52 208.4 209 55.0
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.2e-51 207.2 209 55.0
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.6e-51 206.8 191 58.1
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 1.6e-51 206.8 198 59.1
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.8e-51 206.1 190 57.4
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.1e-50 204.1 209 55.5
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.4e-50 203.8 209 55.0
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 2.3e-50 203.0 209 53.6
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.3e-50 203.0 200 55.0
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.1e-50 202.6 209 55.0
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.1e-50 202.6 207 53.6
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 6.8e-50 201.4 198 54.0
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 8.9e-50 201.1 209 51.7
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 9.9e-49 197.6 196 55.1
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 9.9e-49 197.6 196 55.1
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 9.9e-49 197.6 201 54.7
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.7e-48 196.8 210 51.4
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.7e-48 196.8 212 52.8
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 2.2e-48 196.4 208 55.8
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 2.2e-48 196.4 212 52.8
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 2.9e-48 196.1 210 53.3
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 3.8e-48 195.7 197 54.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.4e-47 193.7 189 54.0
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.9e-47 193.4 291 40.9
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 2.4e-47 193.0 209 51.2
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 4.1e-47 192.2 201 52.7
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.2e-46 190.7 199 53.8
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 1.6e-46 190.3 197 53.8
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 2.1e-46 189.9 209 50.7
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 2.1e-46 189.9 197 53.8
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 2.1e-46 189.9 210 51.0
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.7e-46 189.5 192 53.6
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 7.8e-46 188.0 141 68.1
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 7.8e-46 188.0 194 54.1
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.0e-45 187.6 209 51.2
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 1.3e-45 187.2 191 51.8
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.3e-45 187.2 210 51.0
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.7e-45 186.8 196 52.6
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.7e-45 186.8 209 50.7
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.3e-45 186.4 212 49.5
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.3e-45 186.4 135 71.1
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 2.3e-45 186.4 183 53.6
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 3.0e-45 186.0 199 52.3
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 5.1e-45 185.3 200 50.0
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 5.1e-45 185.3 198 54.0
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 6.6e-45 184.9 194 55.2
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 6.6e-45 184.9 120 78.3
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 3.3e-44 182.6 201 52.2
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 4.3e-44 182.2 194 53.1
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 5.6e-44 181.8 189 51.3
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.6e-43 180.3 212 48.1
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 3.6e-43 179.1 191 50.3
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 3.6e-43 179.1 209 48.8
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 4.7e-43 178.7 209 48.3
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 6.2e-43 178.3 209 50.2
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 6.2e-43 178.3 195 52.3
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.4e-42 177.2 202 47.5
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 1.4e-42 177.2 196 51.5
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 4.0e-42 175.6 142 65.5
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 6.9e-42 174.9 209 48.3
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 6.9e-42 174.9 192 50.0
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 6.9e-42 174.9 211 51.2
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 2.0e-41 173.3 196 52.0
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 2.0e-41 173.3 196 52.0
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 2.0e-41 173.3 196 52.0
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.6e-41 172.9 197 48.2
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 3.4e-41 172.6 201 48.3
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 9.9e-41 171.0 142 59.2
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.3e-40 170.6 196 49.0
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.2e-40 169.9 181 50.8
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 3.8e-40 169.1 141 60.3
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.8e-40 169.1 176 52.8
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 4.9e-40 168.7 209 45.9
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 1.9e-39 166.8 197 48.7
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 3.2e-39 166.0 196 47.4
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 9.3e-39 164.5 124 73.4
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.6e-38 163.7 193 47.7
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 2.7e-38 162.9 192 49.0
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 4.6e-38 162.2 120 65.0
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 6.6e-37 158.3 123 65.9
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.4e-34 150.6 191 45.5
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-33 147.5 122 63.9
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 5.8e-33 145.2 121 62.0
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 8.4e-32 141.4 151 51.7
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.4e-31 140.6 139 58.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 2.4e-31 139.8 138 58.0
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 1.6e-30 137.1 180 47.2
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 6.0e-30 135.2 142 51.4
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.0e-29 134.4 119 58.0
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 1.8e-29 133.7 119 58.0
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.1e-28 131.0 138 55.8
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.9e-28 130.2 209 40.7
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 4.3e-28 129.0 112 58.0
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 1.1e-26 124.4 208 38.9
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 2.4e-26 123.2 106 59.4
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.5e-25 120.6 198 40.4
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.5e-25 120.6 198 40.4
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 1.5e-25 120.6 89 67.4
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 7.6e-25 118.2 96 62.5
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 2.4e-23 113.2 152 48.0
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.2e-22 110.9 118 54.2
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 3.5e-22 109.4 113 52.2
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 4.3e-20 102.4 121 48.8
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 4.5e-17 92.4 90 53.3
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 5.8e-17 92.0 147 42.2
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 7.6e-17 91.7 145 40.0
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.6e-14 84.0 73 56.2
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.1e-13 79.0 46 80.4
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 5.7e-12 75.5 127 39.4
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 2.8e-11 73.2 44 77.3
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 9.0e-10 68.2 141 36.9
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.5e-09 67.4 96 46.9
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-08 64.7 110 38.2
AUR62033068 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.7e-08 63.9 63 57.1
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.9e-08 63.2 50 62.0
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 2.1e-06 57.0 147 30.6


User provided reference genes

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