Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 0.0e+00 1080.9 538 100.0
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 1.7e-211 739.6 549 69.4
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 7.1e-205 717.6 546 69.6
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 3.4e-199 698.7 545 67.0
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 5.8e-199 698.0 545 65.7
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 8.4e-198 694.1 551 65.5
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 7.1e-197 691.0 545 67.7
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.6e-196 689.9 560 65.2
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 2.7e-196 689.1 544 66.5
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.9e-194 682.9 563 63.9
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 9.6e-194 680.6 551 65.5
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.6e-193 679.9 607 61.3
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 4.4e-191 671.8 544 63.1
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.9e-190 669.1 542 64.2
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 4.9e-190 668.3 565 63.5
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.2e-188 663.7 546 65.0
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.2e-188 663.7 549 62.8
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.5e-188 662.1 555 63.6
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 4.6e-188 661.8 539 64.9
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.0e-187 660.6 545 63.7
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 3.9e-187 658.7 557 62.7
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 3.9e-187 658.7 565 62.8
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 5.1e-187 658.3 550 64.7
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 6.6e-187 657.9 543 64.3
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.5e-186 656.8 543 64.1
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.9e-186 656.4 571 62.2
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 7.3e-186 654.4 539 63.1
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 4.8e-185 651.7 537 63.3
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 5.3e-184 648.3 544 62.7
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 9.0e-184 647.5 545 61.5
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 2.0e-183 646.4 539 64.2
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 2.9e-182 642.5 547 63.3
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.1e-181 640.6 552 62.3
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 3.2e-181 639.0 544 63.1
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 4.2e-181 638.6 553 62.4
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.6e-180 636.7 543 61.7
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.8e-179 633.3 541 61.9
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.8e-179 633.3 540 61.3
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 5.1e-179 631.7 544 61.9
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 5.1e-179 631.7 543 61.9
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 2.5e-178 629.4 554 61.6
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 4.3e-178 628.6 550 63.3
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.3e-178 628.6 541 63.0
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 1.6e-177 626.7 558 60.6
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 4.8e-177 625.2 520 63.5
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 9.0e-176 620.9 553 60.0
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.5e-175 620.2 548 58.9
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.6e-175 619.4 542 60.7
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 4.5e-175 618.6 559 60.1
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 4.5e-175 618.6 555 61.3
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.7e-174 616.7 547 60.3
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.2e-174 616.3 555 60.9
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 2.9e-174 615.9 555 60.9
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.8e-174 615.5 547 60.5
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 6.5e-174 614.8 547 60.5
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 6.5e-174 614.8 549 61.2
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.1e-173 614.0 554 61.0
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.4e-173 613.6 552 59.6
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.4e-173 613.6 542 60.5
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.4e-173 613.6 541 60.3
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.9e-173 613.2 543 60.0
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 2.1e-172 609.8 556 61.3
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 6.0e-172 608.2 564 59.0
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 3.0e-171 605.9 550 60.2
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 3.9e-171 605.5 565 59.3
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 8.7e-171 604.4 540 60.0
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.5e-170 603.6 558 59.5
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 9.6e-170 600.9 550 58.4
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.3e-169 600.5 551 58.6
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.6e-169 600.1 562 58.4
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 8.2e-169 597.8 552 58.3
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.8e-168 596.7 561 58.3
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 3.1e-168 595.9 553 59.0
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 1.2e-167 594.0 540 60.2
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 2.9e-166 589.3 556 57.7
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.1e-165 587.4 550 58.2
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.9e-165 586.6 550 57.5
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 6.1e-164 581.6 539 57.1
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.0e-163 580.9 559 57.6
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 1.3e-163 580.5 556 59.5
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.0e-163 579.3 554 55.8
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 5.1e-163 578.6 481 66.3
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 6.7e-163 578.2 619 53.2
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 3.3e-162 575.9 554 55.4
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.6e-161 573.5 561 55.3
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 9.0e-160 567.8 539 58.6
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 2.6e-159 566.2 545 55.0
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.3e-158 563.9 548 57.3
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 5.5e-157 558.5 552 56.2
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 3.6e-156 555.8 545 56.3
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 8.8e-155 551.2 568 54.4
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 7.4e-154 548.1 499 58.5
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 2.8e-153 546.2 576 52.4
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 3.7e-153 545.8 602 50.3
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 1.8e-152 543.5 521 58.5
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.1e-152 542.7 503 59.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 9.1e-152 541.2 491 57.4
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.0e-151 540.0 499 58.5
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.7e-150 537.0 550 55.1
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 1.1e-149 534.3 552 55.1
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.6e-148 530.4 556 55.6
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 2.7e-148 529.6 544 53.3
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 7.9e-148 528.1 465 57.6
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 9.7e-146 521.2 466 56.9
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 3.7e-145 519.2 539 50.6
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 2.4e-144 516.5 520 54.0
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 6.5e-142 508.4 523 55.6
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.6e-140 503.8 556 52.9
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.1e-136 491.1 564 49.1
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 4.1e-136 489.2 514 50.6
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 9.1e-136 488.0 517 51.3
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.6e-135 486.5 553 48.6
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.2e-132 477.6 485 51.3
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 7.5e-130 468.4 457 58.4
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.5e-125 453.4 546 49.5
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 3.4e-122 443.0 539 46.6
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.8e-120 437.2 448 52.7
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 7.7e-119 431.8 553 46.5
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 3.3e-117 426.4 503 51.1
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.1e-116 423.7 455 53.8
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.9e-110 403.3 576 41.5
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.0e-107 394.8 589 40.2
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.0e-107 394.8 589 40.2
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 5.8e-106 389.0 317 63.1
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.7e-105 387.5 536 42.7
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-104 384.8 524 43.9
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.0e-102 376.7 506 43.9
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 5.2e-99 365.9 332 59.6
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.7e-97 360.9 392 54.6
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 3.0e-94 350.1 551 40.8
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 5.6e-93 345.9 358 52.0
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 9.5e-93 345.1 473 47.1
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.3e-77 293.1 608 35.7
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.1e-76 290.8 703 32.0
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.2e-76 289.3 608 34.9
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 6.9e-75 285.8 181 72.4
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 3.5e-71 273.5 168 74.4
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 3.3e-69 266.9 465 39.6
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 3.7e-52 210.3 155 71.6
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 2.4e-51 207.6 186 61.8
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 9.7e-45 185.7 192 46.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.3e-44 185.3 264 45.5
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 1.0e-41 175.6 154 64.3
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.2e-40 169.5 148 64.9
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.1e-39 166.4 282 42.6
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.8e-38 164.9 164 57.9
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 2.0e-37 161.4 136 64.0
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 9.7e-37 159.1 99 69.7
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.7e-31 141.0 129 56.6
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.2e-26 125.6 90 66.7
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 1.7e-25 121.7 179 36.9
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 4.7e-23 113.6 180 35.0
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 1.1e-16 92.4 68 60.3
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.5e-16 91.3 96 56.2
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.2e-15 89.0 99 45.5
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 5.9e-10 70.1 39 79.5
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 4.0e-06 57.4 105 40.0
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 8.8e-06 56.2 113 38.9


User provided reference genes

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