Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 1.1e-134 483.4 255 100.0
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 3.1e-94 349.0 255 70.2
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 9.1e-94 347.4 255 67.8
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 7.5e-88 327.8 255 63.9
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 5.3e-86 321.6 250 65.2
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 1.7e-84 316.6 254 65.7
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 4.7e-82 308.5 250 64.8
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 4.0e-81 305.4 250 62.8
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 1.7e-79 300.1 254 63.0
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 2.8e-79 299.3 251 63.7
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 3.7e-79 298.9 251 64.9
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 4.8e-79 298.5 253 62.8
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 1.4e-78 297.0 253 63.6
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 2.4e-78 296.2 251 64.1
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.1e-78 295.4 253 62.8
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 1.7e-76 290.0 231 65.8
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 1.7e-76 290.0 248 62.1
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 2.3e-76 289.7 255 62.7
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 6.6e-76 288.1 241 63.5
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 6.6e-76 288.1 253 59.3
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 1.1e-75 287.3 248 60.5
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 4.2e-75 285.4 254 59.1
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 5.5e-75 285.0 254 62.6
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 9.5e-75 284.3 248 60.5
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.2e-74 283.9 252 58.7
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 1.2e-74 283.9 253 59.7
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 1.6e-74 283.5 248 61.3
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 6.1e-74 281.6 231 63.6
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 6.1e-74 281.6 231 63.6
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 8.0e-74 281.2 253 61.3
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 8.0e-74 281.2 249 59.8
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 1.8e-73 280.0 253 61.3
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 2.3e-73 279.6 232 62.1
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 3.0e-73 279.3 248 59.3
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 4.4e-72 275.4 252 55.2
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 9.8e-72 274.2 249 60.6
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 9.8e-72 274.2 248 59.7
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 1.3e-71 273.9 246 59.8
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 2.2e-71 273.1 234 65.0
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 2.2e-71 273.1 240 59.2
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 6.3e-71 271.6 248 57.7
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 8.3e-71 271.2 251 59.0
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 1.4e-70 270.4 251 59.8
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 3.2e-70 269.2 246 59.8
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 3.2e-70 269.2 232 62.9
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 4.1e-70 268.9 248 57.7
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 5.4e-70 268.5 252 56.7
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 7.0e-70 268.1 252 59.5
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 9.2e-70 267.7 251 58.2
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 1.2e-69 267.3 247 57.9
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 1.6e-69 266.9 251 58.6
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 2.7e-69 266.2 251 59.4
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 2.7e-69 266.2 249 57.0
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 2.7e-69 266.2 247 56.7
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 3.5e-69 265.8 248 57.3
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 4.5e-69 265.4 292 53.4
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 7.8e-69 264.6 248 57.3
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 1.0e-68 264.2 249 56.6
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 2.3e-68 263.1 246 56.5
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 2.3e-68 263.1 250 58.0
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 3.9e-68 262.3 250 58.0
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 5.0e-68 261.9 248 56.5
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 8.6e-68 261.2 239 61.9
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 8.6e-68 261.2 248 55.2
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 8.6e-68 261.2 250 57.6
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 1.1e-67 260.8 245 55.9
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 1.1e-67 260.8 245 55.9
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 5.6e-67 258.5 245 55.1
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 5.6e-67 258.5 245 55.1
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 5.6e-67 258.5 245 55.1
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 7.3e-67 258.1 248 56.0
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 9.5e-67 257.7 250 57.6
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 1.2e-66 257.3 245 55.9
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 1.2e-66 257.3 230 60.9
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 2.1e-66 256.5 254 55.1
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.8e-66 256.1 248 56.0
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 4.7e-66 255.4 231 56.7
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 6.1e-66 255.0 248 56.0
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 4.4e-64 248.8 227 58.1
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 4.4e-64 248.8 227 57.7
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 7.5e-64 248.1 245 54.7
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 7.5e-64 248.1 245 54.7
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 3.2e-62 242.7 206 64.1
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 1.6e-61 240.4 270 48.9
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 2.7e-61 239.6 171 70.8
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 6.0e-61 238.4 245 53.9
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 3.9e-60 235.7 229 56.8
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 1.9e-59 233.4 223 55.6
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 3.3e-59 232.6 247 50.2
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 1.8e-57 226.9 248 49.2
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 4.0e-57 225.7 226 55.3
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 4.4e-56 222.2 247 52.2
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 2.2e-55 219.9 245 50.2
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 2.4e-54 216.5 189 59.8
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 3.2e-54 216.1 245 50.6
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 2.7e-53 213.0 244 51.6
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 2.3e-52 209.9 224 54.0
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 5.2e-49 198.7 244 47.1
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 3.5e-45 186.0 325 39.4
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 7.8e-45 184.9 162 61.1
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 3.1e-41 172.9 153 59.5
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 1.3e-39 167.5 135 65.2
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 9.6e-35 151.4 246 41.5
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 1.6e-34 150.6 109 67.0
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 1.9e-30 137.1 255 36.1
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 1.7e-28 130.6 136 54.4
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-23 114.4 116 53.4
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-23 114.4 116 53.4
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 4.6e-21 105.9 107 53.3
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 5.6e-19 99.0 154 38.3
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 1.4e-17 94.4 195 31.3
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 5.8e-16 89.0 128 43.8
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 1.9e-14 84.0 94 48.9
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 9.3e-14 81.6 77 55.8
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 8.2e-10 68.6 171 26.9
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 2.4e-09 67.0 62 58.1


User provided reference genes

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