Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 5.9e-40 167.2 89 100.0
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 4.8e-26 120.9 93 72.0
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 4.1e-25 117.9 96 69.8
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 7.0e-25 117.1 94 69.1
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.0e-24 115.5 93 69.9
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.0e-24 115.5 93 69.9
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.1e-22 109.8 92 69.6
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.5e-22 109.4 90 67.8
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.9e-22 109.0 92 66.3
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 5.5e-22 107.5 93 65.6
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 5.5e-22 107.5 94 63.8
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.7e-21 105.1 96 65.6
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.7e-21 105.1 94 63.8
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.6e-21 104.8 99 63.6
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.0e-20 103.2 92 62.0
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.0e-20 103.2 92 62.0
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.0e-20 101.7 94 63.8
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.0e-20 101.7 94 63.8
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 5.2e-20 100.9 94 62.8
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 5.2e-20 100.9 94 67.0
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 6.8e-20 100.5 94 62.8
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 6.8e-20 100.5 94 62.8
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 6.8e-20 100.5 94 60.6
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 8.8e-20 100.1 94 58.5
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 8.8e-20 100.1 90 60.0
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 1.2e-19 99.8 94 58.5
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.5e-19 99.4 94 59.6
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.5e-19 99.4 94 59.6
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 2.6e-19 98.6 94 57.4
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.6e-19 98.6 95 63.2
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 2.6e-19 98.6 94 60.6
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 4.4e-19 97.8 94 60.6
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 5.7e-19 97.4 94 57.4
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 5.7e-19 97.4 94 57.4
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 7.5e-19 97.1 96 61.5
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 7.5e-19 97.1 94 57.4
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 7.5e-19 97.1 94 59.6
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 9.8e-19 96.7 94 57.4
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 9.8e-19 96.7 94 57.4
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 9.8e-19 96.7 94 57.4
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 9.8e-19 96.7 94 57.4
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 9.8e-19 96.7 94 57.4
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.3e-18 96.3 96 59.4
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 2.2e-18 95.5 94 57.4
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 2.2e-18 95.5 94 57.4
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 2.2e-18 95.5 94 57.4
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 2.8e-18 95.1 94 61.7
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 2.8e-18 95.1 93 61.3
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 3.7e-18 94.7 95 57.9
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 3.7e-18 94.7 95 60.0
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 3.7e-18 94.7 92 59.8
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 4.8e-18 94.4 93 64.5
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 5.4e-17 90.9 90 60.0
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 7.0e-17 90.5 94 59.6
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 2.7e-16 88.6 95 58.9
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 4.5e-16 87.8 94 57.4
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 5.9e-16 87.4 119 52.1
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 7.7e-16 87.0 94 57.4
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 7.7e-16 87.0 91 57.1
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.0e-15 86.7 94 57.4
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 2.3e-15 85.5 93 58.1
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 2.9e-15 85.1 118 50.0
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 2.9e-15 85.1 95 54.7
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.9e-15 85.1 85 58.8
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.8e-15 84.7 90 56.7
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.8e-15 84.7 83 60.2
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 5.0e-15 84.3 94 58.5
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.5e-14 82.8 94 55.3
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.9e-14 82.4 51 78.4
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 3.3e-14 81.6 51 76.5
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 4.2e-14 81.3 82 59.8
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 5.5e-14 80.9 83 55.4
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 9.5e-14 80.1 83 59.0
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 9.5e-14 80.1 84 56.0
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.6e-13 79.3 51 74.5
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.6e-13 79.3 85 56.5
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 2.1e-13 79.0 46 84.8
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.8e-13 78.6 84 58.3
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.6e-13 78.2 85 57.6
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 3.6e-13 78.2 131 43.5
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 6.1e-13 77.4 81 55.6
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 8.0e-13 77.0 83 54.2
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 8.0e-13 77.0 83 54.2
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 8.0e-13 77.0 83 57.8
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.0e-12 76.6 90 53.3
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 1.4e-12 76.3 83 57.8
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 1.4e-12 76.3 83 54.2
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 1.8e-12 75.9 82 58.5
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.8e-12 75.9 83 60.2
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 2.3e-12 75.5 93 50.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 2.3e-12 75.5 83 57.8
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 4.0e-12 74.7 83 51.8
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 6.8e-12 73.9 51 74.5
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 6.8e-12 73.9 84 59.5
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 8.9e-12 73.6 83 50.6
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 4.4e-11 71.2 91 51.6
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 5.7e-11 70.9 76 59.2
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 1.3e-10 69.7 107 43.0
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 2.2e-10 68.9 86 46.5
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 1.4e-09 66.2 67 58.2
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 1.8e-09 65.9 83 51.8
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.4e-09 65.5 107 43.0
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 2.4e-09 65.5 53 62.3
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 4.1e-09 64.7 105 42.9
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 4.1e-09 64.7 54 61.1
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 4.1e-09 64.7 54 61.1
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 4.1e-09 64.7 105 42.9
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 4.1e-09 64.7 100 43.0
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 5.4e-09 64.3 104 41.3
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 7.0e-09 63.9 100 48.0
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 9.2e-09 63.5 54 59.3
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 9.2e-09 63.5 106 41.5
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 1.6e-08 62.8 83 50.6
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 2.0e-08 62.4 110 41.8
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 2.0e-08 62.4 110 41.8
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 2.0e-08 62.4 105 44.8
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 2.0e-08 62.4 100 44.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.0e-08 62.4 108 38.9
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 2.7e-08 62.0 109 43.1
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 3.5e-08 61.6 89 47.2
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 4.5e-08 61.2 54 55.6
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 4.5e-08 61.2 109 41.3
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.5e-08 61.2 54 53.7
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 4.5e-08 61.2 82 46.3
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 5.9e-08 60.8 69 49.3
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.3e-07 59.7 89 41.6
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.3e-07 59.7 89 41.6
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.3e-07 59.7 98 39.8
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.7e-07 59.3 98 43.9
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.7e-07 59.3 105 42.9
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 2.3e-07 58.9 111 36.9
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.3e-07 58.9 85 44.7
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 2.3e-07 58.9 105 39.0
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 5.0e-07 57.8 44 68.2
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 5.0e-07 57.8 99 44.4
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 6.6e-07 57.4 74 45.9
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 8.6e-07 57.0 98 42.9
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 8.6e-07 57.0 105 38.1
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.1e-06 56.6 98 42.9
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 1.1e-06 56.6 94 42.6
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.1e-06 56.6 109 35.8
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 1.5e-06 56.2 101 41.6
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.5e-06 56.2 102 38.2
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 1.5e-06 56.2 89 43.8
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 2.5e-06 55.5 46 58.7
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 2.5e-06 55.5 46 58.7
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.5e-06 55.5 102 41.2
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 2.5e-06 55.5 79 45.6
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 2.5e-06 55.5 98 40.8
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.5e-06 55.5 109 35.8
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 3.3e-06 55.1 111 38.7
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.3e-06 55.1 44 63.6
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 3.3e-06 55.1 68 45.6
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 3.3e-06 55.1 102 39.2
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 3.3e-06 55.1 68 47.1
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 4.3e-06 54.7 76 46.1
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 5.6e-06 54.3 91 44.0
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 7.3e-06 53.9 45 62.2
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 7.3e-06 53.9 90 45.6
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 7.3e-06 53.9 74 44.6
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 7.3e-06 53.9 45 66.7
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 9.5e-06 53.5 90 47.8
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 9.5e-06 53.5 51 51.0
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 9.5e-06 53.5 95 46.3
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 9.5e-06 53.5 95 42.1


User provided reference genes

Program Settings