Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 0.0e+00 2332.8 1174 100.0
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.6e-151 540.8 1316 35.6
Sc23g0005170 Simmondsia chinensis HOM05D012164 ORTHO05D003767 2.8e-121 441.0 1171 32.5
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 9.3e-93 346.3 1309 30.7
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.7e-92 344.7 1236 29.6
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.0e-62 246.5 1212 28.4
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 1.1e-61 243.0 1288 26.3
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 3.1e-56 224.9 1293 26.8
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 3.1e-56 224.9 1334 25.0
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 8.0e-52 210.3 1322 26.3
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.3e-49 203.0 1271 26.4
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.3e-49 203.0 1325 24.9
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 8.3e-49 200.3 1320 26.1
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.4e-48 198.7 1322 24.7
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 6.6e-46 190.7 1368 24.8
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 4.7e-44 184.5 1284 24.8
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.5e-42 179.5 1340 23.8
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.3e-41 176.4 1292 24.5
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.3e-41 176.4 1311 25.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 3.7e-41 174.9 1299 24.6
AUR62043520 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.4e-40 172.2 1267 24.7
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 9.2e-40 170.2 1153 25.2
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.6e-39 169.5 1308 24.2
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.3e-38 166.4 1303 23.8
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 8.6e-38 163.7 1282 23.9
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.2e-34 153.3 1309 23.0
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.2e-34 153.3 1280 24.0
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.2e-34 153.3 1298 23.8
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.4e-34 151.8 1321 24.1
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 9.8e-34 150.2 1299 24.0
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.3e-33 149.8 1316 24.7
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-32 146.4 1312 22.8
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 2.4e-32 145.6 1332 24.9
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.1e-32 144.8 1310 22.6
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 2.0e-31 142.5 1310 22.5
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 2.0e-31 142.5 1313 24.8
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.3e-30 139.8 1269 23.6
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.9e-30 138.3 1299 23.4
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 9.5e-29 133.7 1316 23.9
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 9.5e-29 133.7 1108 24.8
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.2e-28 133.3 1292 23.3
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.2e-28 133.3 807 25.8
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.2e-26 126.7 1249 23.5
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 7.5e-26 124.0 822 27.0
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 7.5e-26 124.0 1355 23.2
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.2e-25 122.5 1229 22.1
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.4e-24 119.0 965 24.4
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 7.1e-24 117.5 1139 22.6
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.0e-22 112.1 1111 22.9
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 5.1e-22 111.3 494 25.9
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 8.6e-22 110.5 1345 23.1
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.6e-21 107.8 747 24.5
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.7e-17 95.1 1229 22.6
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 2.4e-16 92.4 1047 24.0
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 2.4e-16 92.4 1258 22.5
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 4.1e-16 91.7 1239 23.5
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 2.1e-15 89.4 1285 21.6
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 6.0e-15 87.8 1264 22.8
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.3e-14 85.9 1301 22.0
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 6.6e-14 84.3 1269 22.2
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.1e-13 83.6 1251 22.3
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.9e-13 82.8 1266 23.0
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.3e-13 82.0 559 25.0
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 4.3e-13 81.6 1222 22.3
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 5.6e-13 81.3 1040 24.0
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 9.6e-13 80.5 1232 22.7
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 2.1e-12 79.3 1221 22.3
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.7e-12 78.2 1248 21.9
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 4.7e-12 78.2 1071 23.6
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 6.2e-12 77.8 993 23.1
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 8.1e-12 77.4 1238 21.6
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.1e-11 77.0 556 24.5
Ah.16g105450 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.4e-11 75.9 222 30.6
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.0e-11 75.1 1247 22.1
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 8.9e-11 73.9 1065 23.8
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 1.2e-10 73.6 1248 21.2
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.5e-10 73.2 1271 21.7
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.6e-10 72.4 1212 22.4
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 2.6e-10 72.4 494 25.1
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 7.6e-10 70.9 1210 21.5
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 7.6e-10 70.9 1286 22.5
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 7.6e-10 70.9 1219 21.2
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 9.9e-10 70.5 980 22.4
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 9.9e-10 70.5 1260 22.6
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.3e-09 70.1 1207 22.1
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.3e-09 70.1 1048 22.4
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.3e-09 70.1 1238 21.5
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.7e-09 69.7 1245 21.4
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 3.8e-09 68.6 1277 21.8
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 4.9e-09 68.2 280 27.5
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 4.9e-09 68.2 1235 21.5
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 8.4e-09 67.4 245 26.1
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 1.1e-08 67.0 512 24.8
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.4e-08 66.6 1213 21.8
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.4e-08 66.6 929 22.3
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 3.2e-08 65.5 1025 21.5
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.2e-07 63.5 1234 21.1
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 1.6e-07 63.2 184 32.1
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 2.1e-07 62.8 1164 20.9
Ah.16g105510 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.7e-07 62.4 123 38.2
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 3.5e-07 62.0 981 22.0
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 3.5e-07 62.0 981 22.0
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 3.5e-07 62.0 84 41.7
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 4.6e-07 61.6 78 42.3
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.0e-06 60.5 1224 22.1
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.7e-06 59.7 502 24.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.3e-06 59.3 1239 20.7
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.3e-06 59.3 649 23.3
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 3.0e-06 58.9 53 50.9
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 3.0e-06 58.9 1240 21.3
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 3.9e-06 58.5 515 24.3
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 5.1e-06 58.2 1198 22.0


User provided reference genes

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