Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.0e-143 513.5 272 100.0
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 3.9e-42 176.0 283 42.4
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 5.1e-42 175.6 283 43.5
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.0e-38 163.7 286 41.6
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 8.4e-37 158.3 275 41.5
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 9.2e-36 154.8 287 39.4
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 7.8e-35 151.8 275 41.1
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 6.6e-34 148.7 288 38.2
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 8.6e-34 148.3 283 38.9
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.1e-33 147.9 306 37.6
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 1.5e-33 147.5 293 39.6
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 9.6e-33 144.8 293 38.9
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.2e-32 144.4 282 38.7
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.1e-32 143.7 293 38.6
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 4.7e-32 142.5 295 39.0
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 6.2e-32 142.1 294 39.1
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 6.2e-32 142.1 291 37.5
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.4e-31 141.0 304 40.5
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 2.4e-31 140.2 282 39.0
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 2.6e-30 136.7 296 39.9
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 2.6e-30 136.7 279 36.2
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 2.2e-29 133.7 289 34.9
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.9e-29 133.3 324 35.2
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 2.9e-29 133.3 286 38.1
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 4.9e-29 132.5 285 35.8
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.1e-28 131.3 281 35.6
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.9e-28 130.6 286 35.7
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.4e-28 130.2 293 37.2
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 4.2e-28 129.4 285 36.1
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 7.1e-28 128.6 293 36.2
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 1.2e-27 127.9 298 37.2
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.3e-26 124.4 289 33.9
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.3e-26 124.4 289 36.0
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.1e-25 121.3 282 35.1
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.1e-25 121.3 268 36.2
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.5e-25 120.2 280 34.6
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 9.6e-25 118.2 292 35.3
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.6e-24 116.3 285 34.4
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 4.8e-24 115.9 276 33.7
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 8.1e-24 115.2 289 34.9
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.1e-23 114.8 279 34.1
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.1e-23 114.8 288 34.7
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.4e-23 114.4 292 36.0
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 1.4e-23 114.4 275 33.1
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 1.8e-23 114.0 229 38.0
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 1.8e-23 114.0 279 33.7
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.8e-23 114.0 281 34.2
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 2.4e-23 113.6 276 35.5
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.2e-22 111.3 275 34.9
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 2.0e-22 110.5 292 33.2
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 2.0e-22 110.5 275 34.9
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.6e-22 110.2 265 35.1
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 7.6e-22 108.6 267 33.7
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 7.6e-22 108.6 282 32.6
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 9.9e-22 108.2 273 34.4
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 1.3e-21 107.8 266 34.2
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 4.9e-21 105.9 299 29.8
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 8.4e-21 105.1 292 33.2
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 1.1e-20 104.8 292 32.2
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 1.4e-20 104.4 278 34.5
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 3.2e-20 103.2 272 32.0
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 7.1e-20 102.1 320 32.8
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 2.7e-19 100.1 269 33.8
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 3.5e-19 99.8 267 34.8
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 6.0e-19 99.0 275 32.4
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 7.9e-19 98.6 291 31.3
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 7.9e-19 98.6 240 34.2
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 7.9e-19 98.6 279 33.0
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.3e-18 97.8 277 32.9
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.3e-18 97.8 277 32.9
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.8e-18 97.4 280 32.9
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.8e-18 97.4 271 34.3
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 2.3e-18 97.1 282 32.3
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 3.9e-18 96.3 270 35.6
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 3.9e-18 96.3 270 35.6
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 3.9e-18 96.3 272 32.7
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 5.1e-18 95.9 288 32.6
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 5.1e-18 95.9 279 33.7
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 6.7e-18 95.5 294 31.6
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 6.7e-18 95.5 284 32.7
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 6.7e-18 95.5 273 33.0
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 6.7e-18 95.5 268 32.1
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 6.7e-18 95.5 298 32.6
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.1e-17 94.7 291 30.6
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 3.3e-17 93.2 287 31.4
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 7.4e-17 92.0 267 32.2
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 7.4e-17 92.0 214 35.5
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 2.1e-16 90.5 273 32.2
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.1e-16 90.5 283 31.1
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.6e-16 89.7 285 29.5
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 4.8e-16 89.4 290 32.8
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 1.1e-15 88.2 268 34.0
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.4e-15 87.8 269 30.5
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.4e-15 87.8 279 29.7
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 1.8e-15 87.4 284 31.0
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 1.8e-15 87.4 165 34.5
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 2.4e-15 87.0 286 30.8
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 2.4e-15 87.0 265 30.2
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.1e-15 86.7 286 31.5
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 6.9e-15 85.5 269 30.1
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 9.0e-15 85.1 195 33.8
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 9.0e-15 85.1 271 31.7
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 9.0e-15 85.1 348 28.7
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 9.0e-15 85.1 136 37.5
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.2e-14 84.7 263 30.0
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 2.0e-14 84.0 269 29.7
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 2.6e-14 83.6 288 30.9
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 2.6e-14 83.6 182 33.0
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 3.4e-14 83.2 294 30.3
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 3.4e-14 83.2 269 29.7
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 4.5e-14 82.8 300 28.7
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 9.9e-14 81.6 290 29.7
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 9.9e-14 81.6 279 30.8
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 9.9e-14 81.6 145 37.2
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.3e-13 81.3 314 27.4
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 2.2e-13 80.5 281 32.0
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 3.8e-13 79.7 348 27.9
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 8.4e-13 78.6 287 30.0
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 8.4e-13 78.6 263 30.4
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 8.4e-13 78.6 278 30.2
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.1e-12 78.2 267 29.6
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 3.2e-12 76.6 282 29.8
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 3.2e-12 76.6 297 29.3
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 5.5e-12 75.9 282 29.8
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 5.5e-12 75.9 282 29.4
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 5.5e-12 75.9 312 28.5
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 7.1e-12 75.5 293 30.0
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 9.3e-12 75.1 297 29.6
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.2e-11 74.7 267 27.3
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 2.1e-11 73.9 272 30.1
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 2.1e-11 73.9 261 28.4
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 2.1e-11 73.9 285 27.7
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 3.5e-11 73.2 277 29.2
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 4.6e-11 72.8 264 28.8
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 4.6e-11 72.8 308 27.6
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 6.0e-11 72.4 309 27.8
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 6.0e-11 72.4 300 28.7
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 1.0e-10 71.6 271 27.7
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.0e-10 71.6 245 30.6
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.3e-10 71.2 266 30.1
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 5.1e-10 69.3 125 36.0
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 6.7e-10 68.9 314 26.4
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 8.7e-10 68.6 262 27.1
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.1e-09 68.2 266 28.6
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.1e-09 68.2 267 30.7
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.5e-09 67.8 265 29.4
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.5e-09 67.8 209 31.6
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.9e-09 67.4 303 28.4
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.9e-09 67.4 137 33.6
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.9e-09 67.4 137 33.6
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 1.9e-09 67.4 177 31.1
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 2.5e-09 67.0 269 29.0
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 2.5e-09 67.0 293 27.6
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 3.3e-09 66.6 268 28.7
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 4.3e-09 66.2 127 35.4
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 4.3e-09 66.2 244 26.6
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 5.6e-09 65.9 131 37.4
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 7.4e-09 65.5 133 34.6
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 7.4e-09 65.5 268 29.5
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 7.4e-09 65.5 271 27.3
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.6e-08 64.3 267 31.1
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 2.1e-08 63.9 283 27.2
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 2.1e-08 63.9 295 28.1
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 2.8e-08 63.5 165 32.1
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 2.8e-08 63.5 223 30.9
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 3.7e-08 63.2 270 27.8
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 3.7e-08 63.2 286 26.9
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 4.8e-08 62.8 252 27.8
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.8e-08 62.8 208 27.9
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 4.8e-08 62.8 131 30.5
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 1.4e-07 61.2 132 31.1
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.8e-07 60.8 164 29.3
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.8e-07 60.8 185 28.1
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 9.0e-07 58.5 293 27.0
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 9.0e-07 58.5 300 25.0
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 1.5e-06 57.8 265 24.9
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 5.8e-06 55.8 303 28.1
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 7.6e-06 55.5 263 27.4
COL.COLO4_18713 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.0e-05 55.1 58 44.8


User provided reference genes

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