Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 4862.7 2489 100.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3376.6 2535 69.5
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3374.7 2513 70.6
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3363.2 2512 70.5
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3350.1 2509 70.3
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3337.0 2537 68.8
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3274.6 2512 67.6
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3273.0 2550 67.3
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3258.8 2512 67.6
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3252.6 2577 66.2
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3251.1 2540 67.2
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3249.1 2544 67.4
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3248.0 2548 66.8
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3239.5 2542 66.8
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3235.3 2539 66.4
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3226.8 2555 66.3
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3218.3 2542 66.2
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3214.5 2542 66.3
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3211.4 2567 66.0
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3208.7 2555 66.0
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3199.1 2572 65.6
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3197.5 2541 66.0
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3190.2 2542 66.0
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3185.6 2548 65.4
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3171.7 2550 65.0
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3141.7 2556 64.4
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3137.8 2514 65.4
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3124.0 2518 65.2
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3121.6 2516 64.7
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3120.5 2513 65.0
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3117.0 2540 64.4
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3113.2 2604 63.9
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3112.4 2537 64.2
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3102.4 2530 64.3
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3102.0 2522 64.8
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3084.7 2521 64.5
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3084.3 2508 64.0
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3082.0 2507 64.0
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3078.5 2515 64.2
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3068.1 2516 64.3
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3067.7 2559 63.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3052.3 2548 63.9
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3044.2 2560 63.3
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3040.0 2837 58.9
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3035.4 2548 62.7
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3032.3 2526 63.1
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3018.8 2542 63.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3004.9 2359 66.3
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3001.8 2520 63.3
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 2977.2 2543 61.7
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 2968.7 2591 62.3
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 2961.8 2569 62.1
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 2946.8 2516 62.1
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2929.0 2508 62.3
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 2928.7 2512 61.6
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 2924.4 2523 61.8
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2922.9 2236 68.0
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2912.5 2528 61.7
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2875.5 2547 59.8
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2844.3 2505 60.7
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2841.6 2495 60.7
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2840.8 2410 63.2
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2825.8 2538 60.0
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2822.3 2529 60.1
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2753.8 2552 58.7
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2732.2 2089 68.2
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2725.7 2230 64.4
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2718.0 2592 58.6
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2556.9 1870 70.7
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2520.3 2039 64.8
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2515.3 1891 69.2
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2376.3 1736 70.7
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2322.0 1645 72.2
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2243.8 2276 54.4
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2129.8 1831 61.6
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2062.0 1728 64.2
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2025.0 1780 61.9
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 1991.9 2693 44.3
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1977.2 1736 60.5
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1954.5 1701 61.1
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1921.7 2775 43.0
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1767.3 1414 67.3
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1630.2 2528 41.1
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1595.9 1185 69.4
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1578.9 1181 70.4
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1568.9 1149 70.5
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1547.7 1102 73.0
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1433.7 2523 38.1
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1431.0 1155 66.1
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1430.2 1148 66.5
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1425.6 1466 54.1
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1396.3 2673 36.0
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1355.9 1592 49.1
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1321.6 1193 59.9
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1277.7 857 76.1
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1271.1 1451 50.4
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1223.8 1178 58.2
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1160.6 903 65.7
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1127.5 748 75.7
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 9.3e-284 981.9 875 61.6
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 4.0e-271 939.9 1104 48.6
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.7e-266 922.5 676 70.7
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 2.7e-259 900.6 613 76.7
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.7e-243 847.4 1003 48.9
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 4.7e-243 846.7 1053 48.3
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 2.6e-217 761.1 633 62.9
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 5.8e-201 706.8 908 46.3
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.5e-188 665.6 653 53.8
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.9e-188 665.2 645 53.5
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 3.5e-182 644.4 613 62.0
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.9e-178 630.2 846 48.1
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 2.1e-174 618.6 493 64.7
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.2e-169 602.8 733 47.9
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.0e-169 602.1 859 43.0
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.8e-163 581.6 385 73.2
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.1e-162 579.7 676 48.4
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.9e-156 558.9 488 60.2
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 2.2e-147 528.9 494 58.5
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 3.1e-138 498.4 491 54.8
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.1e-134 485.7 548 51.3
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 4.5e-129 468.0 480 51.7
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.5e-111 409.8 513 44.4
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 1.7e-107 396.4 264 72.0
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.0e-104 387.1 239 82.8
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 2.3e-85 322.8 350 50.3
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.0e-85 322.0 180 83.9
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.1e-81 309.7 180 82.8
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 3.4e-76 292.4 229 64.2
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.4e-74 287.0 208 74.5
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 4.6e-73 282.0 219 67.6
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 3.0e-72 279.3 204 71.1
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 5.8e-68 265.0 151 84.1
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.2e-66 259.2 158 75.9
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 9.3e-58 231.1 279 47.7
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.3e-56 227.3 302 44.4
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 5.1e-56 225.3 282 48.2
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 6.7e-56 224.9 320 44.7
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 4.0e-53 215.7 314 41.7
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 2.7e-49 203.0 1947 23.0
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 4.6e-49 202.2 282 42.9
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.7e-48 198.4 338 37.6
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 1.0e-40 174.5 198 45.5
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 6.3e-38 165.2 116 79.3
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 2.6e-36 159.8 103 76.7
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 7.2e-34 151.8 116 66.4
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.2e-28 134.4 146 50.7
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 3.6e-25 122.9 101 68.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 3.6e-25 122.9 101 68.3
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 3.7e-22 112.8 119 50.4
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 8.2e-22 111.7 79 79.7
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.1e-21 109.4 143 44.8
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 2.9e-19 103.2 108 53.7
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.9e-16 92.8 131 48.9
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 8.8e-16 91.7 121 48.8
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 2.0e-15 90.5 152 39.5
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 5.7e-15 89.0 76 61.8
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.7e-14 87.4 88 53.4
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 2.4e-13 83.6 67 70.1
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 2.4e-13 83.6 67 70.1
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.0e-11 78.2 73 60.3
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.3e-11 77.8 48 81.2
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 3.8e-11 76.3 73 56.2
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 6.5e-11 75.5 96 49.0
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.5e-10 74.3 197 34.5
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 2.5e-10 73.6 61 62.3
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 7.2e-10 72.0 51 66.7
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.6e-09 70.9 79 59.5
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 2.1e-09 70.5 122 38.5
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 4.7e-09 69.3 58 58.6
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 8.0e-09 68.6 61 57.4
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 1.8e-08 67.4 58 55.2
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 2.3e-08 67.0 204 30.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.4e-07 62.8 56 58.9
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 2.8e-06 60.1 104 39.4


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