Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 2.6e-56 221.9 116 100.0
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 2.3e-28 129.0 105 66.7
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 5.9e-24 114.4 100 64.0
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 5.0e-23 111.3 101 64.4
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 8.5e-23 110.5 99 62.6
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 1.6e-21 106.3 97 60.8
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 2.8e-18 95.5 95 56.8
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 4.8e-18 94.7 75 62.7
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 8.3e-18 94.0 79 60.8
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.1e-17 93.6 74 62.2
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.8e-17 92.8 82 61.0
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 1.8e-17 92.8 82 61.0
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 1.8e-17 92.8 94 53.2
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 1.8e-17 92.8 102 52.9
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 2.4e-17 92.4 97 53.6
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 1.6e-16 89.7 92 55.4
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 2.0e-16 89.4 77 57.1
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 2.0e-16 89.4 82 54.9
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 2.7e-16 89.0 97 52.6
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 4.5e-16 88.2 97 50.5
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 7.7e-16 87.4 94 50.0
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 1.0e-15 87.0 94 54.3
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 1.3e-15 86.7 76 59.2
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 1.7e-15 86.3 88 52.3
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 1.7e-15 86.3 94 51.1
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 2.2e-15 85.9 90 55.6
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 5.0e-15 84.7 74 58.1
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 5.0e-15 84.7 74 54.1
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 5.0e-15 84.7 90 48.9
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 5.0e-15 84.7 74 55.4
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 6.5e-15 84.3 84 54.8
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 1.9e-14 82.8 85 47.1
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 2.5e-14 82.4 85 52.9
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 3.2e-14 82.0 74 55.4
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 3.2e-14 82.0 92 51.1
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 4.2e-14 81.6 90 50.0
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 4.2e-14 81.6 86 51.2
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 4.2e-14 81.6 83 55.4
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 4.2e-14 81.6 85 51.8
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 7.2e-14 80.9 77 55.8
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 7.2e-14 80.9 100 45.0
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 9.4e-14 80.5 89 50.6
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 1.6e-13 79.7 89 48.3
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 1.6e-13 79.7 89 48.3
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 1.6e-13 79.7 74 52.7
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 2.1e-13 79.3 74 51.4
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 2.1e-13 79.3 85 55.3
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 2.1e-13 79.3 84 50.0
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 2.1e-13 79.3 96 44.8
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 2.7e-13 79.0 85 45.9
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 2.7e-13 79.0 81 53.1
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 2.7e-13 79.0 74 52.7
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 3.6e-13 78.6 67 55.2
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 3.6e-13 78.6 82 51.2
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 3.6e-13 78.6 73 57.5
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 4.7e-13 78.2 76 50.0
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 4.7e-13 78.2 82 48.8
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 4.7e-13 78.2 86 46.5
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 6.1e-13 77.8 85 44.7
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 1.0e-12 77.0 75 48.0
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 1.0e-12 77.0 63 58.7
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 1.0e-12 77.0 91 46.2
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 1.4e-12 76.6 81 46.9
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 1.4e-12 76.6 81 46.9
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 1.4e-12 76.6 85 48.2
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 1.8e-12 76.3 69 55.1
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 3.0e-12 75.5 71 50.7
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 4.0e-12 75.1 74 48.6
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 5.2e-12 74.7 72 52.8
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 5.2e-12 74.7 81 51.9
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 5.2e-12 74.7 63 55.6
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 1.5e-11 73.2 63 58.7
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 2.0e-11 72.8 76 53.9
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 2.0e-11 72.8 86 41.9
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 2.6e-11 72.4 62 61.3
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 4.4e-11 71.6 72 50.0
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 4.4e-11 71.6 63 57.1
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 4.4e-11 71.6 63 57.1
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 9.8e-11 70.5 100 40.0
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 1.7e-10 69.7 62 54.8
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 2.8e-10 68.9 66 54.5
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 6.3e-10 67.8 75 44.0
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 8.3e-10 67.4 54 57.4
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 1.6e-08 63.2 93 43.0
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 1.0e-07 60.5 83 39.8
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.7e-07 59.7 73 45.2
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 1.7e-07 59.7 71 49.3
Zm00001eb283780 Zea mays HOM05D025088 ORTHO05D009668 3.8e-07 58.5 68 45.6
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 8.6e-07 57.4 91 37.4
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 3.3e-06 55.5 46 54.3
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 7.2e-06 54.3 50 52.0


User provided reference genes

Program Settings