Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 1.5e-52 210.3 214 100.0
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 3.7e-40 169.1 161 79.5
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.4e-39 167.2 162 75.3
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.8e-39 166.8 158 77.8
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 3.2e-39 166.0 161 75.2
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 1.8e-34 150.2 161 72.7
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 1.8e-34 150.2 158 72.2
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 2.3e-34 149.8 158 76.6
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 5.2e-34 148.7 161 72.0
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 5.2e-34 148.7 162 70.4
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 3.4e-33 146.0 158 79.1
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 9.8e-33 144.4 152 77.0
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 9.8e-33 144.4 158 69.6
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 1.3e-32 144.1 163 73.0
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.7e-32 143.7 152 70.4
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 1.7e-32 143.7 160 73.1
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 2.2e-32 143.3 159 74.8
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 2.2e-32 143.3 158 69.0
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 3.7e-32 142.5 160 71.2
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 3.7e-32 142.5 159 71.1
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 3.7e-32 142.5 159 67.3
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 6.4e-32 141.7 159 67.3
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 6.4e-32 141.7 159 67.3
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 6.4e-32 141.7 158 69.0
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 6.4e-32 141.7 158 67.1
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 8.3e-32 141.4 156 78.2
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 8.3e-32 141.4 158 73.4
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 1.1e-31 141.0 156 65.4
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 1.1e-31 141.0 154 78.6
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 1.1e-31 141.0 157 78.3
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 1.4e-31 140.6 159 63.5
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 1.4e-31 140.6 149 72.5
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.4e-31 140.6 160 68.8
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 1.4e-31 140.6 160 68.8
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.4e-31 140.6 160 68.8
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 2.4e-31 139.8 159 75.5
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 2.4e-31 139.8 159 75.5
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 3.2e-31 139.4 160 67.5
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 3.2e-31 139.4 160 70.0
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 4.1e-31 139.0 152 71.7
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 4.1e-31 139.0 152 75.7
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 5.4e-31 138.7 158 62.7
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 7.0e-31 138.3 160 67.5
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 7.0e-31 138.3 160 66.2
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 1.2e-30 137.5 155 61.9
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 1.6e-30 137.1 160 67.5
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 2.0e-30 136.7 154 77.9
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 2.0e-30 136.7 154 66.9
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 2.7e-30 136.3 160 76.2
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 7.8e-30 134.8 160 71.2
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 1.7e-29 133.7 154 66.2
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 1.7e-29 133.7 159 73.0
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 1.7e-29 133.7 149 78.5
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 1.7e-29 133.7 157 71.3
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 1.7e-29 133.7 149 73.8
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 2.3e-29 133.3 158 64.6
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 3.0e-29 132.9 144 56.2
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 3.0e-29 132.9 150 67.3
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 5.0e-29 132.1 160 75.0
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 6.6e-29 131.7 149 68.5
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 6.6e-29 131.7 149 68.5
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 6.6e-29 131.7 161 66.5
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 8.6e-29 131.3 158 65.2
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 8.6e-29 131.3 152 67.1
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 1.1e-28 131.0 149 74.5
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.5e-28 130.6 157 68.8
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 1.9e-28 130.2 161 77.0
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.9e-28 130.2 92 75.0
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 2.5e-28 129.8 162 65.4
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 2.5e-28 129.8 150 65.3
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 2.5e-28 129.8 150 76.0
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 2.5e-28 129.8 152 63.2
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 7.3e-28 128.3 155 61.9
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 9.5e-28 127.9 159 64.2
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 9.5e-28 127.9 159 76.7
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 1.2e-27 127.5 149 67.1
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 1.2e-27 127.5 160 68.8
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 1.6e-27 127.1 158 63.9
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 1.6e-27 127.1 142 76.1
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 2.1e-27 126.7 158 65.2
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 2.1e-27 126.7 150 68.0
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 2.1e-27 126.7 158 63.9
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 4.7e-27 125.6 156 75.0
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 4.7e-27 125.6 151 78.1
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 8.1e-27 124.8 93 71.0
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 1.4e-26 124.0 149 68.5
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 1.8e-26 123.6 93 71.0
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 2.3e-26 123.2 157 68.2
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 1.9e-23 113.6 158 71.5
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 3.5e-22 109.4 128 62.5
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 3.0e-21 106.3 159 57.9
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 5.1e-21 105.5 152 46.7
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 1.9e-20 103.6 160 65.0
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 4.7e-19 99.0 83 66.3
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.5e-17 94.0 126 66.7
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 1.5e-17 94.0 76 63.2
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 5.8e-17 92.0 95 51.6
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 9.9e-17 91.3 95 51.6
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 9.9e-17 91.3 95 52.6
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 4.9e-16 89.0 61 75.4
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.9e-15 87.0 61 73.8
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.1e-14 83.6 159 32.1
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 6.0e-14 82.0 86 48.8
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 2.3e-13 80.1 75 49.3
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 4.3e-12 75.9 106 60.4
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 1.6e-11 73.9 108 65.7
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 8.1e-11 71.6 106 65.1
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 2.4e-10 70.1 86 51.2
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 5.2e-10 68.9 54 63.0
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.0e-09 67.0 107 66.4


User provided reference genes

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