Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 0.0e+00 1149.0 567 100.0
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 1.5e-213 746.5 573 66.1
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.5e-210 736.5 554 66.2
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.1e-205 720.3 510 68.8
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 3.3e-205 718.8 537 66.1
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 2.2e-204 716.1 482 72.2
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 6.3e-204 714.5 537 65.2
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 1.8e-203 713.0 492 68.5
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 3.1e-203 712.2 488 70.3
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 7.0e-203 711.1 546 65.0
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 5.9e-202 708.0 552 64.7
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 5.9e-202 708.0 483 70.8
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 1.0e-201 707.2 518 67.2
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.3e-201 706.8 516 66.9
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 1.7e-201 706.4 546 64.7
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 2.2e-201 706.1 498 68.3
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 2.9e-201 705.7 480 70.4
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 1.5e-200 703.4 478 70.5
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.5e-200 703.4 498 68.3
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 4.2e-200 701.8 502 67.5
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 1.6e-199 699.9 483 67.9
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 2.7e-199 699.1 506 69.8
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 2.7e-199 699.1 503 66.6
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 3.6e-199 698.7 535 64.9
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 3.6e-199 698.7 529 66.0
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 4.7e-199 698.4 481 68.8
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.3e-198 696.0 484 69.2
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 3.0e-198 695.7 513 66.5
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 1.5e-197 693.3 490 68.0
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 4.4e-197 691.8 522 65.1
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.7e-197 691.4 491 69.0
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.7e-197 691.4 484 68.6
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 9.7e-197 690.6 481 68.8
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 9.7e-197 690.6 532 63.9
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.7e-196 689.9 479 69.1
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.7e-196 689.9 483 68.9
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.8e-196 689.1 491 68.8
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.8e-196 689.1 540 64.3
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.7e-196 688.7 484 68.8
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 4.8e-196 688.3 531 62.0
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 6.3e-196 688.0 486 68.1
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.1e-195 687.2 560 63.6
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 2.4e-195 686.0 481 67.8
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.6e-194 683.3 512 66.6
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 3.5e-194 682.2 503 68.0
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 5.0e-193 678.3 476 68.9
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 2.5e-192 676.0 529 65.2
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 5.5e-192 674.9 477 67.5
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 9.4e-192 674.1 590 58.3
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 9.4e-192 674.1 511 65.9
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 4.7e-191 671.8 578 60.6
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 1.4e-190 670.2 590 58.5
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 4.0e-190 668.7 516 63.6
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.0e-189 666.4 502 63.3
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 4.4e-189 665.2 502 65.9
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 9.8e-189 664.1 503 64.6
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 3.7e-188 662.1 518 62.5
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 1.1e-187 660.6 538 63.2
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 9.1e-187 657.5 473 66.2
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 1.6e-186 656.8 542 61.1
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 1.6e-186 656.8 489 66.9
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 2.0e-186 656.4 495 64.0
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 2.0e-186 656.4 546 59.7
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 1.3e-185 653.7 486 64.0
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 1.3e-185 653.7 537 61.8
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.3e-185 652.9 477 65.8
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 9.5e-184 647.5 544 58.1
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 3.6e-183 645.6 473 64.7
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.4e-182 643.7 559 58.0
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 2.3e-182 642.9 557 57.6
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 1.5e-181 640.2 555 57.7
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 1.5e-181 640.2 564 57.4
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.5e-181 640.2 448 68.5
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.6e-181 639.4 626 55.1
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 7.5e-181 637.9 555 57.3
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.5e-178 629.0 427 71.0
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 3.5e-178 629.0 528 60.4
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 7.8e-178 627.9 515 61.2
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 2.9e-177 625.9 583 55.6
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.5e-176 622.9 568 56.7
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 8.0e-175 617.8 434 68.4
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 1.4e-174 617.1 586 54.6
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 1.4e-174 617.1 494 62.3
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 3.1e-174 615.9 479 61.8
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.6e-173 612.8 472 62.9
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 1.3e-172 610.5 567 55.4
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 6.4e-172 608.2 567 55.4
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 4.1e-171 605.5 579 53.9
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 3.5e-170 602.4 480 60.6
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 3.9e-169 599.0 562 55.0
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 3.2e-155 552.7 488 57.2
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 9.2e-155 551.2 372 72.3
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 5.1e-153 545.4 430 64.9
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 6.6e-153 545.0 389 67.6
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 1.6e-151 540.4 393 67.4
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 2.0e-149 533.5 513 52.8
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 4.9e-148 528.9 369 70.5
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 9.3e-147 524.6 430 60.9
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 6.0e-146 521.9 485 56.7
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 7.3e-144 515.0 381 62.7
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.7e-140 503.8 348 70.1
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 1.4e-139 500.7 534 51.3
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 2.7e-138 496.5 342 68.4
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.9e-128 463.8 407 57.7
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 3.1e-126 456.4 346 65.6
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 4.9e-124 449.1 347 64.6
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 5.5e-123 445.7 496 51.6
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 1.3e-121 441.0 437 48.1
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.0e-121 439.9 325 65.8
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 5.7e-120 435.6 328 64.9
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 5.3e-118 429.1 471 50.3
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.6e-114 416.0 322 64.0
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 8.7e-113 411.8 487 43.3
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.3e-111 407.9 290 68.3
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.4e-110 404.4 498 44.8
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 7.7e-109 398.7 300 63.3
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 2.9e-108 396.7 300 62.7
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 6.1e-98 362.5 247 68.0
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 2.2e-95 354.0 247 70.9
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.2e-93 348.2 253 64.8
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.5e-93 346.3 259 67.2
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 4.8e-79 299.7 542 34.1
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 9.1e-78 295.4 253 55.3
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.7e-77 293.9 210 67.6
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.7e-72 276.2 264 55.3
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.6e-58 230.3 158 63.9
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 6.2e-58 229.6 146 73.3
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.3e-57 227.6 162 67.9
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.0e-57 226.9 203 51.7
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.2e-53 215.3 135 75.6
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 4.6e-37 160.2 205 46.8
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 5.1e-36 156.8 123 60.2
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-35 155.6 172 43.0
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 3.1e-33 147.5 103 68.0
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 5.8e-32 143.3 148 56.1
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 4.2e-30 137.1 91 72.5
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 6.0e-29 133.3 90 72.2
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.1e-27 129.0 177 46.3
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 9.6e-27 125.9 150 42.0
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.1e-25 122.5 93 66.7
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 3.1e-25 120.9 89 65.2
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 1.3e-18 99.0 150 42.7
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.1e-13 81.6 72 55.6
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 2.2e-07 61.6 63 46.0


User provided reference genes

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