Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 5.1e-102 374.4 186 100.0
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 3.6e-100 368.2 186 98.9
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 2.6e-74 282.3 190 73.2
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 9.3e-72 273.9 187 72.2
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 4.6e-71 271.6 187 70.6
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 4.6e-71 271.6 187 70.6
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 6.0e-71 271.2 170 75.9
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 6.0e-71 271.2 185 69.7
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 3.9e-70 268.5 189 69.3
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 1.5e-69 266.5 175 71.4
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 3.3e-69 265.4 171 73.7
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 7.4e-69 264.2 211 63.0
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 1.6e-68 263.1 189 67.2
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 2.2e-68 262.7 187 67.4
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 3.7e-68 261.9 190 70.0
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 4.8e-68 261.5 177 69.5
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 4.8e-68 261.5 188 68.1
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 1.4e-67 260.0 169 72.8
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 1.4e-67 260.0 170 72.4
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 1.8e-67 259.6 188 67.6
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 3.1e-67 258.8 183 66.7
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 4.1e-67 258.5 184 65.2
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 4.1e-67 258.5 192 65.6
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 5.3e-67 258.1 187 68.4
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 5.3e-67 258.1 181 68.5
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 5.3e-67 258.1 170 72.4
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 6.9e-67 257.7 168 73.2
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 9.0e-67 257.3 177 70.1
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 9.0e-67 257.3 187 67.9
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 9.0e-67 257.3 169 72.2
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 2.0e-66 256.1 169 71.6
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 3.4e-66 255.4 181 66.3
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 3.4e-66 255.4 190 66.8
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 4.5e-66 255.0 189 66.1
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 4.5e-66 255.0 186 65.6
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 2.2e-65 252.7 177 69.5
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 2.9e-65 252.3 181 65.7
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 3.8e-65 251.9 182 64.8
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 3.2e-64 248.8 179 68.7
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 3.2e-64 248.8 183 66.1
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 5.5e-64 248.1 169 67.5
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 1.2e-63 246.9 169 66.9
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 1.2e-63 246.9 187 62.6
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 2.7e-63 245.7 180 64.4
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 2.7e-63 245.7 180 64.4
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 2.7e-63 245.7 183 63.4
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 3.6e-63 245.4 182 64.3
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 3.6e-63 245.4 175 68.6
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 3.6e-63 245.4 165 68.5
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 3.6e-63 245.4 182 68.1
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 4.6e-63 245.0 169 67.5
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 6.1e-63 244.6 186 62.4
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 1.4e-62 243.4 189 62.4
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 1.8e-62 243.0 180 63.3
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 3.0e-62 242.3 168 68.5
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 3.9e-62 241.9 169 66.3
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 3.9e-62 241.9 183 62.8
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 5.1e-62 241.5 169 65.7
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 1.1e-61 240.4 158 70.9
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 5.7e-61 238.0 176 63.1
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 5.7e-61 238.0 183 61.7
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 7.4e-61 237.7 178 67.4
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 9.7e-61 237.3 165 66.7
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 3.7e-60 235.3 164 72.6
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 4.8e-60 235.0 177 66.1
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 8.2e-60 234.2 165 67.9
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 4.1e-59 231.9 158 68.4
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 6.9e-59 231.1 151 73.5
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 9.1e-59 230.7 158 67.7
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 1.5e-58 229.9 161 67.1
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 7.7e-58 227.6 173 63.6
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 8.5e-57 224.2 165 66.7
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 1.1e-56 223.8 164 67.1
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 1.2e-55 220.3 176 64.2
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 6.1e-55 218.0 165 63.6
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 7.9e-55 217.6 138 73.9
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 7.9e-55 217.6 166 61.4
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 1.1e-53 213.8 265 45.7
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 6.3e-52 208.0 148 65.5
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 2.4e-51 206.1 154 66.2
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 4.1e-51 205.3 161 59.0
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 7.7e-50 201.1 167 57.5
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 5.5e-48 194.9 158 58.9
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 6.1e-47 191.4 161 52.8
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 1.1e-45 187.2 187 52.9
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 9.7e-45 184.1 125 69.6
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 1.1e-43 180.6 156 51.3
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 1.8e-43 179.9 119 73.9
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 5.3e-43 178.3 138 65.2
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 1.2e-42 177.2 158 51.9
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 8.5e-41 171.0 175 46.9
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 5.5e-40 168.3 154 59.1
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 9.4e-40 167.5 124 63.7
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 1.2e-39 167.2 117 65.8
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 8.0e-39 164.5 128 60.9
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 8.0e-39 164.5 132 58.3
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 1.4e-38 163.7 108 68.5
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 1.5e-37 160.2 97 76.3
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 2.0e-37 159.8 132 59.1
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 2.6e-37 159.5 130 56.9
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 4.8e-36 155.2 109 67.9
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 2.4e-35 152.9 116 62.9
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 1.2e-34 150.6 97 74.2
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 3.8e-33 145.6 107 67.3
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 5.0e-33 145.2 159 47.2
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 8.5e-33 144.4 98 71.4
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 8.0e-31 137.9 97 66.0
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 1.7e-28 130.2 88 68.2
Haze_21697 Corylus avellana HOM05D000022 ORTHO05D010831 6.6e-25 118.2 98 64.3
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 6.6e-25 118.2 131 51.1
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 8.6e-25 117.9 75 77.3
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 9.5e-24 114.4 140 43.6
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 2.8e-20 102.8 155 32.9
Hma1.2p1_0443F.1_g154040 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.7e-17 93.6 82 54.9
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 6.1e-15 85.1 49 81.6
ECA238G0229 Erigeron canadensis HOM05D007029 ORTHO05D008258 8.0e-15 84.7 73 53.4
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 9.2e-11 71.2 49 65.3


User provided reference genes

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