Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 5.4e-36 153.7 72 100.0
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 93.1
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 1.9e-33 145.2 72 91.7
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 3.3e-33 144.4 72 87.5
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 3.3e-33 144.4 72 87.5
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 93.1
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 5.6e-33 143.7 72 87.5
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 9.6e-33 142.9 72 90.3
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 87.5
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 88.9
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 1.6e-32 142.1 72 86.1
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.6e-32 142.1 72 86.1
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 1.6e-32 142.1 72 86.1
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 2.1e-32 141.7 72 87.5
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 2.1e-32 141.7 72 88.9
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 2.8e-32 141.4 72 86.1
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 2.8e-32 141.4 72 88.9
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 2.8e-32 141.4 72 86.1
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 88.9
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 87.5
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 87.5
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 6.2e-32 140.2 72 87.5
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 8.1e-32 139.8 72 87.5
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 8.1e-32 139.8 72 87.5
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 8.1e-32 139.8 72 84.7
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 8.1e-32 139.8 70 88.6
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 1.1e-31 139.4 72 86.1
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.1e-31 139.4 72 86.1
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.1e-31 139.4 72 86.1
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.1e-31 139.4 72 86.1
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 1.4e-31 139.0 72 84.7
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 1.4e-31 139.0 72 83.3
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 1.8e-31 138.7 72 83.3
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 1.8e-31 138.7 71 84.5
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 2.4e-31 138.3 72 84.7
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 3.1e-31 137.9 72 84.7
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 4.0e-31 137.5 72 81.9
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 5.3e-31 137.1 72 81.9
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 6.9e-31 136.7 69 87.0
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 1.2e-30 136.0 72 80.6
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.2e-30 136.0 72 83.3
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 1.5e-30 135.6 72 81.9
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 2.6e-30 134.8 72 83.3
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 81.9
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 3.4e-30 134.4 71 84.5
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 5.8e-30 133.7 72 80.6
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 5.8e-30 133.7 72 80.6
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 1.0e-29 132.9 71 83.1
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 1.0e-29 132.9 72 80.6
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 1.7e-29 132.1 72 79.2
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 1.7e-29 132.1 70 82.9
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.2e-29 131.7 72 79.2
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 2.9e-29 131.3 71 80.3
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 2.9e-29 131.3 72 77.8
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 3.8e-29 131.0 71 81.7
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 4.9e-29 130.6 72 75.0
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 1.1e-28 129.4 71 77.5
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 1.1e-28 129.4 71 77.5
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.4e-28 129.0 72 79.2
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 2.5e-28 128.3 72 76.4
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 3.2e-28 127.9 70 78.6
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 3.2e-28 127.9 70 78.6
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 1.2e-27 125.9 68 77.9
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 1.2e-27 125.9 68 77.9
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 1.2e-27 125.9 68 77.9
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.2e-27 125.9 70 78.6
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.5e-27 124.4 107 57.9
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.6e-27 124.0 70 77.1
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.6e-27 124.0 107 57.0
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 4.6e-27 124.0 72 73.6
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 3.0e-26 121.3 68 77.9
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 3.9e-26 120.9 71 71.8
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 6.7e-26 120.2 72 76.4
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 1.9e-25 118.6 70 71.4
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 4.3e-25 117.5 71 71.8
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 4.3e-25 117.5 70 68.6
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 5.7e-25 117.1 70 70.0
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 5.7e-25 117.1 72 75.0
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 3.1e-23 111.3 114 50.0
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 5.3e-23 110.5 56 91.1
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 1.2e-22 109.4 59 79.7
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.5e-22 109.0 63 74.6
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 2.0e-22 108.6 68 67.6
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 3.4e-22 107.8 63 76.2
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.4e-22 107.8 57 80.7
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 3.4e-22 107.8 67 70.1
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 1.0e-21 106.3 56 80.4
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 1.3e-21 105.9 56 85.7
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 1.3e-21 105.9 56 83.9
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 2.2e-21 105.1 61 77.0
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.9e-21 104.8 56 82.1
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 2.9e-21 104.8 71 66.2
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 3.8e-21 104.4 56 80.4
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 5.0e-21 104.0 57 77.2
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 6.5e-21 103.6 56 80.4
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 2.5e-20 101.7 56 78.6
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 3.2e-20 101.3 56 75.0
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 3.2e-20 101.3 56 75.0
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 3.2e-20 101.3 56 75.0
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 4.2e-20 100.9 56 73.2
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 4.2e-20 100.9 56 82.1
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 4.2e-20 100.9 56 82.1
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 4.2e-20 100.9 56 78.6
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 9.3e-20 99.8 56 73.2
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 9.3e-20 99.8 52 82.7
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 3.5e-19 97.8 56 76.8
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 6.1e-19 97.1 56 75.0
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 1.3e-18 95.9 56 76.8
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 3.9e-18 94.4 71 60.6
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.5e-17 92.4 55 74.5
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.5e-17 92.4 49 79.6
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 4.3e-17 90.9 56 69.6
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 9.7e-17 89.7 52 73.1
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 4.8e-16 87.4 71 57.7
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 1.4e-15 85.9 56 64.3
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.4e-15 85.9 69 52.2
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.5e-14 82.4 56 71.4
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 2.0e-14 82.0 44 81.8
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 5.9e-14 80.5 72 50.0
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 1.3e-13 79.3 42 81.0
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.1e-12 76.3 50 68.0
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 3.2e-12 74.7 68 50.0
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 2.3e-10 68.6 65 47.7
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 3.0e-10 68.2 56 51.8
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 3.0e-10 68.2 71 45.1
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 6.3e-08 60.5 50 58.0
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 1.5e-06 55.8 30 80.0


User provided reference genes

Program Settings