Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 8.2e-143 510.4 258 100.0
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 4.9e-87 325.1 225 72.0
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.6e-85 320.1 222 72.5
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 3.9e-84 315.5 222 66.7
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 2.5e-83 312.8 222 68.5
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 5.6e-83 311.6 223 68.6
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 1.4e-81 307.0 222 66.7
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 1.4e-81 307.0 222 68.0
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 1.8e-81 306.6 223 66.8
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 2.0e-80 303.1 222 67.6
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 2.6e-80 302.8 261 61.7
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 5.8e-80 301.6 222 65.8
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 9.9e-80 300.8 222 64.4
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 2.9e-79 299.3 222 62.6
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 6.4e-79 298.1 222 62.2
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 1.4e-78 297.0 222 62.2
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 1.4e-78 297.0 222 65.3
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 1.2e-77 293.9 221 62.9
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 4.6e-77 292.0 222 63.1
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 4.6e-77 292.0 222 64.0
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 7.8e-77 291.2 222 64.0
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 7.8e-77 291.2 222 62.2
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 1.3e-76 290.4 221 62.4
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 1.3e-76 290.4 222 61.3
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 5.1e-76 288.5 222 63.1
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 3.3e-75 285.8 222 62.2
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 9.6e-75 284.3 222 60.4
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 2.8e-74 282.7 222 60.4
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 4.8e-74 282.0 222 59.0
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 4.8e-74 282.0 222 62.2
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 1.4e-73 280.4 220 62.3
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 1.4e-73 280.4 223 59.2
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 1.4e-73 280.4 223 59.2
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 2.4e-73 279.6 222 60.4
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 4.0e-73 278.9 221 58.8
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 5.3e-73 278.5 222 59.9
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 6.9e-73 278.1 228 59.2
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 9.0e-73 277.7 221 59.3
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 9.9e-72 274.2 222 60.8
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 9.9e-72 274.2 221 58.4
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 1.7e-71 273.5 222 59.9
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.7e-71 273.5 222 59.9
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 1.7e-71 273.5 221 59.3
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.8e-71 272.3 222 59.5
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 3.8e-71 272.3 221 58.4
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 4.9e-71 271.9 222 61.7
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 6.4e-71 271.6 222 58.6
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 1.1e-70 270.8 221 58.4
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 1.4e-70 270.4 221 56.6
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 1.4e-70 270.4 222 57.7
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.4e-70 269.6 223 58.7
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.2e-70 269.2 222 59.5
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 9.3e-70 267.7 201 64.2
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 3.5e-69 265.8 258 53.5
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 5.1e-68 261.9 218 61.9
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 5.1e-68 261.9 223 60.1
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 6.6e-68 261.5 222 57.2
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 6.6e-68 261.5 221 57.0
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 2.5e-67 259.6 222 56.3
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 4.3e-67 258.8 222 56.3
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 9.6e-67 257.7 222 55.4
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 3.6e-66 255.8 222 56.8
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.8e-65 253.4 222 56.8
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 4.0e-65 252.3 344 43.0
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 9.0e-65 251.1 222 53.6
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 9.0e-65 251.1 222 54.1
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 2.0e-64 250.0 222 53.2
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 2.6e-64 249.6 222 54.1
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 3.4e-64 249.2 222 56.8
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 4.5e-64 248.8 268 50.4
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 1.7e-63 246.9 222 56.3
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 4.9e-63 245.4 222 55.0
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 2.4e-62 243.0 223 53.4
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 1.9e-59 233.4 222 55.9
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 5.6e-59 231.9 223 51.6
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 3.1e-57 226.1 242 47.5
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 3.1e-57 226.1 221 52.9
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 3.1e-57 226.1 223 50.2
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 1.2e-56 224.2 229 49.8
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 1.5e-56 223.8 223 49.3
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 5.8e-56 221.9 223 48.9
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 5.8e-56 221.9 223 48.9
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 7.6e-56 221.5 223 49.3
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 3.8e-55 219.2 222 50.0
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 1.1e-54 217.6 160 63.1
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 4.2e-54 215.7 223 47.5
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 7.1e-54 214.9 223 47.5
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 4.6e-53 212.2 223 47.1
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 7.9e-53 211.5 174 62.6
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 1.0e-52 211.1 227 53.3
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 5.7e-51 205.3 196 56.6
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 5.7e-51 205.3 223 46.2
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 7.4e-51 204.9 196 56.6
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 3.1e-49 199.5 240 46.7
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 7.6e-48 194.9 171 60.2
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 7.6e-48 194.9 229 46.3
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 1.4e-46 190.7 228 45.6
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.6e-42 177.2 100 83.0
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 2.8e-42 176.4 234 37.6
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 2.9e-39 166.4 149 59.7
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 9.4e-38 161.4 168 48.8
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.4e-33 146.7 112 67.9
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 1.5e-32 144.1 172 44.8
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 7.9e-29 131.7 231 33.8
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 8.2e-26 121.7 139 46.8
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.1e-17 94.7 52 76.9
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.1e-17 94.7 52 76.9
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 1.1e-17 94.7 198 29.3
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 1.2e-16 91.3 52 73.1
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 5.9e-16 89.0 52 69.2
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 2.5e-14 83.6 52 65.4


User provided reference genes

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