Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 2.6e-36 154.8 77 100.0
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 5.7e-15 84.0 49 79.6
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 9.7e-15 83.2 44 84.1
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 9.7e-15 83.2 49 71.4
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 9.7e-15 83.2 49 71.4
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 1.3e-14 82.8 64 64.1
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.6e-14 82.4 41 90.2
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.2e-14 82.0 52 75.0
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 4.8e-14 80.9 46 76.1
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.4e-13 79.3 48 75.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.4e-13 79.3 48 75.0
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.4e-13 79.3 44 81.8
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.4e-13 79.3 48 68.8
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.4e-13 79.3 52 71.2
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.4e-13 79.3 56 64.3
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.8e-13 79.0 43 79.1
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.8e-13 79.0 44 79.5
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 2.4e-13 78.6 52 67.3
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 2.4e-13 78.6 52 69.2
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.4e-13 78.6 44 79.5
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 3.1e-13 78.2 44 77.3
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 3.1e-13 78.2 44 79.5
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 3.1e-13 78.2 49 69.4
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 3.1e-13 78.2 45 73.3
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 3.1e-13 78.2 43 79.1
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 3.1e-13 78.2 46 73.9
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 4.1e-13 77.8 43 79.1
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 5.3e-13 77.4 44 75.0
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 5.3e-13 77.4 53 67.9
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 5.3e-13 77.4 55 69.1
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 6.9e-13 77.0 38 84.2
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 6.9e-13 77.0 46 76.1
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 6.9e-13 77.0 46 76.1
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 9.1e-13 76.6 42 78.6
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 9.1e-13 76.6 52 69.2
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.2e-12 76.3 49 71.4
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.5e-12 75.9 44 72.7
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.0e-12 75.5 49 65.3
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 2.0e-12 75.5 56 62.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 2.0e-12 75.5 51 68.6
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.0e-12 75.5 61 60.7
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 3.4e-12 74.7 43 74.4
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 4.5e-12 74.3 37 81.1
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 5.9e-12 73.9 44 72.7
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 5.9e-12 73.9 55 63.6
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 5.9e-12 73.9 43 79.1
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 7.7e-12 73.6 44 75.0
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 7.7e-12 73.6 37 86.5
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 7.7e-12 73.6 53 66.0
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 1.0e-11 73.2 55 65.5
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.0e-11 73.2 44 68.2
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.0e-11 73.2 44 70.5
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.0e-11 73.2 49 69.4
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.0e-11 73.2 38 76.3
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.0e-11 73.2 42 73.8
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.0e-11 73.2 42 73.8
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.3e-11 72.8 42 76.2
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.3e-11 72.8 37 81.1
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 1.7e-11 72.4 63 58.7
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.7e-11 72.4 57 63.2
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.7e-11 72.4 45 68.9
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.7e-11 72.4 43 72.1
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 2.2e-11 72.0 42 71.4
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.2e-11 72.0 44 68.2
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 2.9e-11 71.6 40 77.5
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.9e-11 71.6 44 72.7
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 2.9e-11 71.6 38 76.3
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.9e-11 71.6 42 71.4
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 3.8e-11 71.2 44 77.3
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 3.8e-11 71.2 53 60.4
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 3.8e-11 71.2 50 66.0
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 3.8e-11 71.2 62 59.7
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 5.0e-11 70.9 53 66.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.4e-10 69.3 61 59.0
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.9e-10 68.9 53 60.4
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 2.5e-10 68.6 39 76.9
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 4.2e-10 67.8 42 66.7
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 7.2e-10 67.0 61 54.1
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 9.4e-10 66.6 44 65.9
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.2e-09 66.2 56 55.4
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.2e-09 66.2 65 53.8
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.2e-09 66.2 39 71.8
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.2e-09 66.2 52 65.4
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 6.1e-09 63.9 52 61.5
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.8e-08 62.4 38 68.4


User provided reference genes

Program Settings