Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.4e-127 458.0 235 100.0
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.0e-83 312.4 229 69.0
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.9e-83 312.0 230 68.7
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.7e-83 311.2 232 72.0
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 5.3e-80 301.6 233 67.0
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 4.2e-77 292.0 236 63.6
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.2e-76 290.4 230 67.0
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.7e-76 289.3 232 63.8
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.7e-76 289.3 230 67.4
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 3.5e-76 288.9 236 64.4
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 4.6e-76 288.5 232 63.8
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.8e-75 286.6 232 63.4
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.3e-75 286.2 229 65.1
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 6.7e-75 284.6 205 69.3
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 6.7e-75 284.6 205 69.3
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 6.7e-75 284.6 227 66.5
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 8.7e-75 284.3 234 65.4
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 1.1e-74 283.9 222 66.7
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-74 283.9 190 75.3
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.5e-74 283.5 195 70.3
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.5e-74 283.5 205 68.8
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.9e-74 283.1 227 64.8
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.9e-74 283.1 233 64.8
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 2.5e-74 282.7 216 70.4
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 2.5e-74 282.7 190 74.7
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 3.3e-74 282.3 190 70.0
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.3e-74 282.3 238 64.7
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 4.3e-74 282.0 195 69.7
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 4.3e-74 282.0 205 70.2
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 4.3e-74 282.0 232 66.8
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 4.3e-74 282.0 233 64.4
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 5.7e-74 281.6 205 70.2
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 5.7e-74 281.6 205 70.2
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 5.7e-74 281.6 237 63.3
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 7.4e-74 281.2 190 75.3
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 7.4e-74 281.2 189 75.7
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 7.4e-74 281.2 179 75.4
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 9.6e-74 280.8 192 72.9
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 9.6e-74 280.8 233 67.8
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.3e-73 280.4 228 65.8
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.3e-73 280.4 227 64.8
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.3e-73 280.4 237 62.9
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.3e-73 280.4 227 65.6
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.6e-73 280.0 235 66.4
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.1e-73 279.6 192 73.4
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.1e-73 279.6 231 62.8
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.1e-73 279.6 236 61.4
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 2.1e-73 279.6 235 66.4
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 2.8e-73 279.3 238 63.0
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.8e-73 279.3 221 64.7
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.8e-73 279.3 189 74.6
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 3.7e-73 278.9 238 61.8
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 6.3e-73 278.1 188 70.2
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 8.2e-73 277.7 238 64.7
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.1e-72 277.3 229 65.9
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 1.1e-72 277.3 218 66.5
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.8e-72 276.6 235 63.4
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.8e-72 276.6 236 64.0
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.8e-72 276.6 243 64.2
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.4e-72 276.2 233 64.8
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 2.4e-72 276.2 233 62.2
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 3.1e-72 275.8 235 63.4
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 4.1e-72 275.4 239 63.6
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 4.1e-72 275.4 239 63.6
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.5e-71 273.5 235 65.1
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.0e-71 273.1 225 66.7
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 2.0e-71 273.1 221 67.0
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 3.4e-71 272.3 240 63.3
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 5.9e-71 271.6 240 62.1
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.0e-70 270.8 237 62.0
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 1.0e-70 270.8 232 63.8
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 1.0e-70 270.8 232 63.8
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.3e-70 270.4 236 63.6
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.7e-70 270.0 234 60.7
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.2e-70 269.6 235 62.6
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.9e-70 269.2 233 63.5
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 3.8e-70 268.9 235 64.3
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 3.8e-70 268.9 230 62.2
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 8.4e-70 267.7 234 65.4
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 8.4e-70 267.7 235 62.1
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.1e-69 267.3 235 61.3
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 5.5e-69 265.0 232 64.7
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 7.2e-69 264.6 231 63.6
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.6e-68 263.5 233 62.2
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.1e-68 263.1 230 65.7
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 3.5e-68 262.3 179 73.7
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 6.1e-68 261.5 239 61.1
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 6.1e-68 261.5 221 63.8
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 6.1e-68 261.5 233 62.7
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.3e-67 260.4 230 62.6
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 1.3e-67 260.4 236 61.9
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 1.8e-67 260.0 187 73.8
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 1.1e-66 257.3 206 64.6
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.5e-66 256.9 221 61.5
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 5.7e-66 255.0 236 56.8
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 9.7e-66 254.2 203 65.0
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 2.0e-63 246.5 183 71.0
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.5e-61 239.6 176 69.3
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.6e-60 236.9 182 67.0
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.7e-60 236.1 228 60.5
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.0e-59 234.2 220 58.6
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.8e-59 233.4 179 65.9
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.1e-58 230.7 190 62.6
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 9.7e-58 227.6 179 65.4
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 2.2e-57 226.5 187 61.0
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 6.3e-57 224.9 172 66.3
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.2e-52 210.7 132 74.2
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.0e-50 203.4 143 66.4
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 2.5e-45 186.4 144 60.4
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 4.2e-45 185.7 144 60.4
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 1.6e-44 183.7 183 52.5
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 8.0e-44 181.4 144 59.0
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.8e-43 180.3 144 58.3
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.0e-43 179.5 144 58.3
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 4.0e-43 179.1 144 56.9
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 4.0e-43 179.1 144 56.9
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 4.0e-43 179.1 144 56.9
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 4.0e-43 179.1 144 57.6
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 5.2e-43 178.7 144 57.6
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 5.2e-43 178.7 144 57.6
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-42 177.6 144 56.2
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.1e-42 177.6 144 56.2
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.6e-42 176.4 144 56.9
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.6e-42 176.4 144 57.6
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 7.0e-40 168.3 168 48.8
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.7e-36 156.4 230 43.5
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.0e-35 154.5 105 73.3
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.4e-35 154.1 102 71.6
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.2e-34 151.0 145 47.6
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.4e-32 144.1 146 47.9
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 3.1e-32 142.9 103 70.9
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 2.0e-31 140.2 155 45.2
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.5e-29 133.3 131 58.0
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.7e-28 129.8 155 43.9
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.0e-27 126.3 189 38.6
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 6.8e-27 125.2 178 42.1
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 4.9e-25 119.0 133 54.1
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 8.3e-25 118.2 233 39.9
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.7e-22 110.5 130 45.4
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 3.3e-21 106.3 206 35.0
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 4.3e-21 105.9 87 57.5
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 7.3e-21 105.1 192 34.9
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 3.0e-19 99.8 192 32.8
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 4.0e-19 99.4 230 37.0
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.6e-18 96.7 101 50.5
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.9e-17 93.2 59 76.3
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 3.7e-17 92.8 70 57.1
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.2e-16 89.7 105 51.4
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 5.0e-14 82.4 104 42.3
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 9.8e-10 68.2 48 68.8
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.0e-08 62.0 84 39.3
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.0e-08 62.0 84 39.3


User provided reference genes

Program Settings